Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0950
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-7|CAB60290.1|  338|Caenorhabditis elegans Hypothetical pr...    90   1e-18
AL110480-3|CAB60328.1|  338|Caenorhabditis elegans Hypothetical ...    90   1e-18
Z49912-5|CAA90136.1|  312|Caenorhabditis elegans Hypothetical pr...    33   0.14 
Z50044-1|CAA90353.2|  184|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z93378-2|CAB07583.1|  184|Caenorhabditis elegans Hypothetical pr...    28   7.1  
L07144-7|AAK21444.2|  646|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine rece...    27   9.4  

>Z73426-7|CAB60290.1|  338|Caenorhabditis elegans Hypothetical
           protein Y24F12A.2 protein.
          Length = 338

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 44/82 (53%), Positives = 60/82 (73%)
 Frame = +3

Query: 267 DHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFP 446
           D +P ++LMG +RSGK+SI+KVVF KMSPNET+F+EST +I +D I  SSF+ F+  +FP
Sbjct: 24  DSRPTVILMGHKRSGKTSIRKVVFQKMSPNETMFVESTARITRDTI-CSSFINFETIEFP 82

Query: 447 GQIDFFDPTFDSDTIFGGCGAL 512
           GQ+  FD + D   +F  C AL
Sbjct: 83  GQMCPFDDSLDPVGVFQKCEAL 104



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/44 (50%), Positives = 32/44 (72%)
 Frame = +2

Query: 506 SLVFVIDAQDDYQDALDKLQLTVTKAYRVNSNIKFEVFIHKVDG 637
           +L+F+IDAQ + Q+ +  L     +AY++N NIKFEVF+HK DG
Sbjct: 103 ALLFIIDAQAELQEPIATLVEYFCRAYKINQNIKFEVFVHKADG 146


>AL110480-3|CAB60328.1|  338|Caenorhabditis elegans Hypothetical
           protein Y24F12A.2 protein.
          Length = 338

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 44/82 (53%), Positives = 60/82 (73%)
 Frame = +3

Query: 267 DHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFP 446
           D +P ++LMG +RSGK+SI+KVVF KMSPNET+F+EST +I +D I  SSF+ F+  +FP
Sbjct: 24  DSRPTVILMGHKRSGKTSIRKVVFQKMSPNETMFVESTARITRDTI-CSSFINFETIEFP 82

Query: 447 GQIDFFDPTFDSDTIFGGCGAL 512
           GQ+  FD + D   +F  C AL
Sbjct: 83  GQMCPFDDSLDPVGVFQKCEAL 104



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/44 (50%), Positives = 32/44 (72%)
 Frame = +2

Query: 506 SLVFVIDAQDDYQDALDKLQLTVTKAYRVNSNIKFEVFIHKVDG 637
           +L+F+IDAQ + Q+ +  L     +AY++N NIKFEVF+HK DG
Sbjct: 103 ALLFIIDAQAELQEPIATLVEYFCRAYKINQNIKFEVFVHKADG 146


>Z49912-5|CAA90136.1|  312|Caenorhabditis elegans Hypothetical
           protein T24F1.1 protein.
          Length = 312

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +3

Query: 273 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFPGQ 452
           K ++LLMG   SGK+S++ ++F      +   L  T ++    +     +   +WD  GQ
Sbjct: 4   KRKVLLMGKSGSGKTSMRSIIFANYIARDCSRLGPTIEVEHAHVKFLGNMVLHLWDCGGQ 63

Query: 453 IDFFD 467
             F +
Sbjct: 64  ESFME 68


>Z50044-1|CAA90353.2|  184|Caenorhabditis elegans Hypothetical
           protein F22B5.1 protein.
          Length = 184

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 267 DHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQ--IWD 440
           + + RIL++GL  +GK+++ K    +  P +T  +E T   +  DI    F  FQ  +WD
Sbjct: 14  EREMRILILGLDNAGKTTLMKKFLDE--PTDT--IEPT---LGFDIKTVHFKDFQLNLWD 66

Query: 441 FPGQ 452
             GQ
Sbjct: 67  VGGQ 70


>Z93378-2|CAB07583.1|  184|Caenorhabditis elegans Hypothetical
           protein F19H8.3 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 279 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFPGQ 452
           RILL+GL  +GK++I K    ++S  +   +  T       +     ++  +WD  GQ
Sbjct: 19  RILLLGLDNAGKTTILK----QLSSEDVQHVTPTKGFNVKTVAAMGDIRLNVWDIGGQ 72


>L07144-7|AAK21444.2|  646|Caenorhabditis elegans Hypothetical
           protein R05D3.9 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 306 SGKSSIQKVVFHKMSPNETLFLE 374
           SGK S QK+   K  PNE + LE
Sbjct: 212 SGKRSHQKISMEKFGPNELILLE 234


>U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein220 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 174 VLITHNLGKVQTKIRTNGNYCIL 106
           VL+ H +G + T I   G YCIL
Sbjct: 23  VLLLHTIGLLSTPIHIFGGYCIL 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,348
Number of Sequences: 27780
Number of extensions: 340530
Number of successful extensions: 702
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)