Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0950
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    29   2.2  
At1g02930.1 68414.m00260 glutathione S-transferase, putative sim...    29   2.2  
At1g02920.1 68414.m00259 glutathione S-transferase, putative sim...    29   2.2  
At2g24765.1 68415.m02959 ADP-ribosylation factor 3 (ARF3) identi...    29   3.8  
At3g10500.1 68416.m01260 no apical meristem (NAM) family protein...    28   6.6  
At2g15310.1 68415.m01746 ADP-ribosylation factor, putative simil...    27   8.7  

>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -2

Query: 520 YKDKAPHPPNMVSESNVGSKKSICPGKSHI*NCTKLLLLMSSLTI*FVDSKNNV 359
           + +  P+  +++ ESN  SK+ +  G  HI   +    L+SSL   FVD K+++
Sbjct: 405 FLESCPNLKSLIMESNSNSKRMLLNGNYHINFSSVPKCLLSSLE--FVDIKSSI 456


>At1g02930.1 68414.m00260 glutathione S-transferase, putative
           similar to glutathione S-transferase GI:860955 from
           [Hyoscyamus muticus]
          Length = 208

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 243 ISILLERSIGKIFGERPHITIWIVLIT 163
           I  LL     K+F ERPH++ W+  IT
Sbjct: 173 IQYLLGTPTKKLFDERPHVSAWVADIT 199


>At1g02920.1 68414.m00259 glutathione S-transferase, putative
           similar to glutathione S-transferase GI:860955 from
           [Hyoscyamus muticus]; supported by cDNA GI:443697.
          Length = 209

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 243 ISILLERSIGKIFGERPHITIWIVLIT 163
           I  LL     K+F ERPH++ W+  IT
Sbjct: 174 IQYLLGTPTKKLFDERPHVSAWVADIT 200


>At2g24765.1 68415.m02959 ADP-ribosylation factor 3 (ARF3) identical
           to GP:453191 ADP-ribosylation factor 3 {Arabidopsis
           thaliana}; contains domain PF00025: ADP-ribosylation
           factor family
          Length = 182

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/66 (25%), Positives = 36/66 (54%)
 Frame = +3

Query: 255 SLQDDHKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQI 434
           S+  + + RIL++GL  +GK++I     +++   E +    T     + +  ++ ++FQ+
Sbjct: 11  SVFGNKEARILVLGLDNAGKTTI----LYRLQMGEVVSTIPTIGFNVETVQYNN-IKFQV 65

Query: 435 WDFPGQ 452
           WD  GQ
Sbjct: 66  WDLGGQ 71


>At3g10500.1 68416.m01260 no apical meristem (NAM) family protein
           similar to  to NAC2 (GI:645671) [Arabidopsis thaliana];
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 549

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +3

Query: 366 FLESTNQIVKDD-----INNSSFVQFQIWDFPGQIDFFDPTFDSDTIFG 497
           FL+  + ++++D      N+ S  Q   +DF   + FFD TFD   + G
Sbjct: 327 FLDPNSNLLENDGLYLETNDLSSTQQDGFDFEDYLTFFDETFDPSQLMG 375


>At2g15310.1 68415.m01746 ADP-ribosylation factor, putative similar
           to ADP-ribosylation factor (GI:861205) [Chlamydomonas
           reinhardtii]
          Length = 205

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 273 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNQIVKDDINNSSFVQFQIWDFPGQ 452
           K RIL++GL  SGK++I     +K+   E +    T     + +     + F +WD  GQ
Sbjct: 17  KVRILMVGLDGSGKTTI----LYKLKLGEVVTTVPTIGFNLETVEYKG-INFTVWDIGGQ 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,677,540
Number of Sequences: 28952
Number of extensions: 312537
Number of successful extensions: 642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)