Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0948
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|...    27   2.5  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   3.3  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   4.3  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   10.0 

>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 503 KSPVIFSCEVAHHI*YALWVQLIDYLDSF 417
           + PV F   V  H+  + W++L DY+ +F
Sbjct: 50  QKPVTFFGSVTEHVSNSWWIKLYDYMMTF 78


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 239 KKDMLGLLSGWSFITSYKSSWFS 307
           KKD+L L+S  S ++S    WFS
Sbjct: 36  KKDLLSLISSKSLLSSETLGWFS 58


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = +3

Query: 312 MIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVNKLDPQSVLDMVRN----F 479
           + P  TS   ++T L   E  +      G +L+Y   + ++N ++ +S+LD         
Sbjct: 295 LFPEATSMLVVETVLP--EGPSFKKLKEGDILLYVNSMILINLIELESILDESVGKDVVL 352

Query: 480 TAEYDRTLILIKCTMN*INSVVPIPCTRYTLIC 578
           T +    L+ + CT    + + P    RY  +C
Sbjct: 353 TVQRGSELVELTCTAQSTHDIAP---DRYVEVC 382


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 276 LLPVTSQAGFHMMIPLLTSYKAIQTTLQTDE 368
           +LP +S+   H + PL T+ + +   L++DE
Sbjct: 437 MLPTSSEDNLHPLQPLTTADEEMDLDLKSDE 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,428
Number of Sequences: 5004
Number of extensions: 57736
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)