Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0948
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...    81   6e-16
12_02_0080 + 13314740-13315892,13316725-13316732                       34   0.090
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406...    31   1.1  
12_02_0723 - 22532379-22532902,22533060-22533135,22533195-225333...    29   4.5  
05_05_0258 - 23656473-23657828                                         28   7.8  

>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 39/87 (44%), Positives = 57/87 (65%)
 Frame = +3

Query: 255 VYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVV 434
           VY+RGGALL   +  GFH+ +P +T ++ IQ       V+N+PCGT GGV+I F++IEVV
Sbjct: 167 VYWRGGALLETITPPGFHVKLPWITQFEPIQ-------VRNIPCGTKGGVMISFDKIEVV 219

Query: 435 NKLDPQSVLDMVRNFTAEYDRTLILIK 515
           N+L  + V + + N+   YD+T I  K
Sbjct: 220 NRLHKEFVHETLLNYGVHYDKTWIYDK 246



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 25/43 (58%), Positives = 37/43 (86%)
 Frame = +2

Query: 506 FNKVHHELNQFCSAHTLHEVYIDLFDQIDENLXQHLQKDLLKW 634
           ++K+HHE+NQFCSAH+L +VYIDLFDQIDE + + +Q+D  ++
Sbjct: 244 YDKIHHEINQFCSAHSLQQVYIDLFDQIDETMKEAIQRDCTRY 286


>12_02_0080 + 13314740-13315892,13316725-13316732
          Length = 386

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 168 PIFYFGHCDSGCRGHGSFFPS*SRRRTCWVYYRGGALLPVTSQAGFHMMIPLLT 329
           P FY     SGCR H    P  + R  C+  Y G  +     QA  H+++ L+T
Sbjct: 65  PAFYC--VPSGCRPHPFVLPPAALRARCFGSYNGAWIFQAVDQAANHVLLNLIT 116


>05_05_0254 -
           23638544-23640090,23640280-23640408,23640619-23640626,
           23641442-23642682
          Length = 974

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 195 SGCRGHGSFFPS*SRRRTCWVYYRGGALLPVTSQAGFHMMIPLLTSYK 338
           +GCRGHG   P  +R    +  Y GG L     Q   H ++ L T  +
Sbjct: 71  AGCRGHGFGIPDDARAARYFGTYGGGWLFLAFGQIKRHALLSLRTEQR 118


>12_02_0723 -
           22532379-22532902,22533060-22533135,22533195-22533380,
           22533459-22534323,22534740-22534918,22535168-22535542
          Length = 734

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 506 FNKVHHELNQFCSAHTLHEVYIDLFDQIDENL 601
           F KV +  N+F + H +H V  D+ DQ+ + L
Sbjct: 96  FKKVTNLFNKFKTNHQIHGVMKDIMDQVKKEL 127


>05_05_0258 - 23656473-23657828
          Length = 451

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 198 GCRGHGSFFPS*SRRRTCWVYYRGGALLPVTSQAGFHMMIPL 323
           GC GHG   P  +R   C+  Y GG L     +   H ++ L
Sbjct: 108 GCGGHGLGVPHDARAARCFGAYDGGWLFLAFRETFRHKLLSL 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,101,800
Number of Sequences: 37544
Number of extensions: 342110
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)