Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0948
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical...   121   4e-28
Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z81055-11|CAB02899.2|  384|Caenorhabditis elegans Hypothetical p...    27   9.2  
AL022716-6|CAA18774.2|  384|Caenorhabditis elegans Hypothetical ...    27   9.2  

>CU457741-16|CAM36358.1|  312|Caenorhabditis elegans Hypothetical
           protein C42C1.15 protein.
          Length = 312

 Score =  121 bits (292), Expect = 4e-28
 Identities = 56/87 (64%), Positives = 66/87 (75%)
 Frame = +3

Query: 255 VYYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVV 434
           VYYRGGALL   +  G+HM IP LT+ K++Q TLQTDE  NVPCGTSGGVLIYF+RIEVV
Sbjct: 31  VYYRGGALLKAVTNPGYHMHIPFLTTVKSVQVTLQTDEATNVPCGTSGGVLIYFDRIEVV 90

Query: 435 NKLDPQSVLDMVRNFTAEYDRTLILIK 515
           N L   SV  +V+N+T +YDR LI  K
Sbjct: 91  NFLSQDSVYAIVKNYTVDYDRPLIFNK 117



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 31/42 (73%), Positives = 36/42 (85%)
 Frame = +2

Query: 506 FNKVHHELNQFCSAHTLHEVYIDLFDQIDENLXQHLQKDLLK 631
           FNKVHHE+NQFCS HTL EVYIDLFD+IDE +   LQ+DL+K
Sbjct: 115 FNKVHHEVNQFCSVHTLQEVYIDLFDKIDEEIKNALQEDLVK 156



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 181 LAIVILAVGVTVHF-SLHKVEEGHVG 255
           LA+ + A+ + +   +LHK+EEGHVG
Sbjct: 5   LALGLFALWIAIFSQALHKIEEGHVG 30


>Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical
           protein F21A3.2b protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 281 TSYKSSWFSHDDTTSNIIQSHSD 349
           TSY  +W ++DDT  +I++  +D
Sbjct: 107 TSYSITWMTYDDTLKSIVEYGTD 129


>Z81055-11|CAB02899.2|  384|Caenorhabditis elegans Hypothetical
           protein C24F3.3 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 668 REXALNPLKPGAISEDPFANAAVNSRRFDQTNQCIPRARYGHY 540
           R   + PLKPG   ED     A +  + ++  QC   AR G Y
Sbjct: 237 RLATMTPLKPGVTLEDNMKFTATDIEKLNRLGQC--GARGGQY 277


>AL022716-6|CAA18774.2|  384|Caenorhabditis elegans Hypothetical
           protein C24F3.3 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 668 REXALNPLKPGAISEDPFANAAVNSRRFDQTNQCIPRARYGHY 540
           R   + PLKPG   ED     A +  + ++  QC   AR G Y
Sbjct: 237 RLATMTPLKPGVTLEDNMKFTATDIEKLNRLGQC--GARGGQY 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,275,893
Number of Sequences: 27780
Number of extensions: 323688
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)