Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0948
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          27   0.22 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      27   0.22 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 491 IFSCEVAHHI*YALWVQLIDYLDSFKINQHP 399
           IFS  +     Y ++ ++IDY  S+K++Q P
Sbjct: 408 IFSTSMKDPAFYRIYKRIIDYYHSYKMHQKP 438


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 491 IFSCEVAHHI*YALWVQLIDYLDSFKINQHP 399
           IFS  +     Y ++ ++IDY  S+K++Q P
Sbjct: 408 IFSTSMKDPAFYRIYKRIIDYYHSYKMHQKP 438


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 270 GALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGV 404
           GAL  + S  G+  + PL+  +  I  T     +  +P G  GG+
Sbjct: 301 GALAGLLSVLGYKYITPLIQKHLKIHDTCGVHNLHGMP-GILGGI 344


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 282 PVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTS 395
           P+ S   F  + P+ T+    Q+T+QT   +  P  TS
Sbjct: 385 PIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTS 422


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,864
Number of Sequences: 438
Number of extensions: 3685
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)