Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0948
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03510.1 68415.m00311 band 7 family protein contains Pfam pro...   105   4e-23
At1g13600.1 68414.m01595 bZIP transcription factor family protei...    29   3.8  
At5g48520.1 68418.m05999 expressed protein similar to unknown pr...    28   5.0  
At2g04860.1 68415.m00501 pentatricopeptide (PPR) repeat-containi...    28   5.0  
At3g03670.1 68416.m00370 peroxidase, putative similar to peroxid...    28   6.6  
At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containi...    28   6.6  

>At2g03510.1 68415.m00311 band 7 family protein contains Pfam
           profile PF01145: SPFH domain / Band 7 family
          Length = 356

 Score =  105 bits (251), Expect = 4e-23
 Identities = 45/86 (52%), Positives = 63/86 (73%)
 Frame = +3

Query: 258 YYRGGALLPVTSQAGFHMMIPLLTSYKAIQTTLQTDEVKNVPCGTSGGVLIYFERIEVVN 437
           Y+RGGALL + ++ GFH+ +P +T+Y+ +Q TLQTD+V+++PCGT GGVLI FE+IEVVN
Sbjct: 58  YWRGGALLNIITEPGFHLKLPFITNYEPVQVTLQTDQVRDIPCGTKGGVLITFEKIEVVN 117

Query: 438 KLDPQSVLDMVRNFTAEYDRTLILIK 515
           +L    V D + N+   YD T I  K
Sbjct: 118 RLRKDFVYDTLLNYGVNYDNTWIYDK 143



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 24/43 (55%), Positives = 35/43 (81%)
 Frame = +2

Query: 506 FNKVHHELNQFCSAHTLHEVYIDLFDQIDENLXQHLQKDLLKW 634
           ++K+HHE+NQFCS+H+L +VYID+FDQIDE +   LQ D  ++
Sbjct: 141 YDKIHHEINQFCSSHSLQQVYIDIFDQIDERMKDALQADCTRY 183


>At1g13600.1 68414.m01595 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 196

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 267 PDNKPNMSFFYFMKGKMNRDPYSQNHNGQN 178
           P +  + S FY + G +N + YS + NGQ+
Sbjct: 35  PSSPTSCSSFYHLNGLINNNNYSSSSNGQD 64


>At5g48520.1 68418.m05999 expressed protein similar to unknown
           protein (gb|AAB97010.1)
          Length = 671

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 139 YLKKLITMADQSSILAIV---ILAVGVTVHFSLHKVEEGHVGFIIGVELYYQLQVKLV 303
           +++  +  A Q +IL  +   + +V   +HF LH +   H   +  +   YQ + KL+
Sbjct: 336 WIEAQVENAKQQAILLTLKSQVTSVEAHIHFDLHSLRRKHADLVEEISTLYQKEEKLL 393


>At2g04860.1 68415.m00501 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 582

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +3

Query: 402 VLIYFERIEVVNKLDPQSVLDMVRNFTAEYDRTLILIKCTM-N*INSVVPIPCTRYTLIC 578
           + ++    E   ++ P ++++++    +      +++KC M N I+ V  + C      C
Sbjct: 127 ITVFKNMFEKNVEISPVTIINLLSAHVSHEPLHCLVVKCGMVNDISVVTSLVCAYSRCGC 186

Query: 579 LIKSTRIYXS 608
           L+ + R+Y S
Sbjct: 187 LVSAERLYAS 196


>At3g03670.1 68416.m00370 peroxidase, putative similar to peroxidase
           GB:CAA66966 [Arabidopsis thaliana]
          Length = 321

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 10  LVLLFIFSSLCLNLKINNFN*ICPYSDSMKSNLIK 114
           L+LLFIF      LK   ++  CP ++++  NL++
Sbjct: 10  LLLLFIFPVALAQLKFKFYSESCPNAETIVENLVR 44


>At1g11710.1 68414.m01344 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 657

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 25  IFSSLCLNLKINNFN*ICPYSDSMKSNLI 111
           +FS+LCLNL+   +N +  +S S+ + LI
Sbjct: 32  LFSALCLNLRQRRWNTLHQFSSSLTNPLI 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,118
Number of Sequences: 28952
Number of extensions: 291138
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)