Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0943
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    27   2.5  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   2.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   2.5  

>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
 Frame = +3

Query: 87  NYNLLSLCGRFHLDESLLEVAFCASVCKGSTFDIRQTHLLFFREFATK*IASNMKVMLSS 266
           NYN+   C   H D   L +A CA  CK     +   H     EF TK   + M+++   
Sbjct: 16  NYNIWIDCDPGHDDVVALTLAACAGHCK--ILGVSTVHGNTTLEFTTKNALAVMELLNQD 73

Query: 267 LPVWLWVCWP-RKTHAIRTSTKDADGL 344
           + V      P  +  A  T     +GL
Sbjct: 74  VDVHAGAAKPLMRESAFATHIHGTNGL 100


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 264 SLPVWLWVCWPRKTHAIRTSTKDA 335
           ++P+ LW+C P  T  + TST+DA
Sbjct: 94  NVPITLWICAP-LTAILSTSTRDA 116


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 169 KAVLSTYVKRTCYFFENS 222
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,575
Number of Sequences: 5004
Number of extensions: 46432
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)