Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0943
         (680 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.12 
SB_51628| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.00061)       29   3.5  

>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +1

Query: 259 SHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAVLQRVLR 375
           SH  LSG GC G+GR +  E++ R      +A+LQ +LR
Sbjct: 58  SHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_51628| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.00061)
          Length = 351

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
 Frame = +2

Query: 389 NHVVANELKALASLYLK-----RSYHYLLSAXYFNNYQTNXEGFXSSSGNYR 529
           N ++ANEL  + S +L+     R+ ++L    Y N+++   +GF SSS  +R
Sbjct: 117 NAIIANELDIIGS-WLEWNEDHRNKYFLFDQLYKNSHEQTLKGFRSSSVKHR 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,703,108
Number of Sequences: 59808
Number of extensions: 365256
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)