Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0943
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical ...    28   5.4  
AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical ...    28   5.4  

>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +1

Query: 298 GRLMLSERRPRMQT----DFKSAVLQRVLRPIQGQP 393
           GRLML  ++  M+T    DFKSA+L   L P+  +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


>Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical
           protein T28A8.2 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 452 YLLSAXYFNNYQTNXEGFXSSSGNYRTIPXEKTXGLIKXVTKRGGKMDFFE 604
           Y  S  YF N ++   GF  +S  + T+P       +  V  R  + DFF+
Sbjct: 151 YYQSFKYFPNMRSELRGFLETSEKFPTLPKSDNKNYVTCVHIR--RSDFFD 199


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/87 (22%), Positives = 38/87 (43%)
 Frame = +2

Query: 170 RQYFRHTSNALVIFSRIRH*INRIKYEGDALIVACLALGVLAEEDSCYQNVDQGCRRTLS 349
           R  FR  ++  V        +++  Y G+     C+A GV+A++      VD+  + T  
Sbjct: 303 RNAFRVLNDTFVTSDSGTGVVHQAPYFGEIDFQVCVANGVIAKDQKMICPVDESGKYTSE 362

Query: 350 LPYCSAYYGQFKDNHVVANELKALASL 430
           +P     Y +  D  ++   LK + +L
Sbjct: 363 VPDYQGVYVKDADK-LIIKRLKEMGNL 388


>AC024859-9|ABQ13045.1|  296|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14a protein.
          Length = 296

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 431 YLKRSYHYLLSAXYFNNYQTNXEGFXSSSGNYRTIP 538
           +L    H+  S  YF   Q    G+   SGNY ++P
Sbjct: 78  FLHLDSHFYQSWKYFAGMQRELIGYVKKSGNYSSLP 113


>AC024859-8|ABQ13046.1|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.14b protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 431 YLKRSYHYLLSAXYFNNYQTNXEGFXSSSGNYRTIP 538
           +L    H+  S  YF   Q    G+   SGNY ++P
Sbjct: 119 FLHLDSHFYQSWKYFAGMQRELIGYVKKSGNYSSLP 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,599,183
Number of Sequences: 27780
Number of extensions: 263003
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)