Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0942
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5A602 Cluster: Cellulose synthase 2; n=9; Phytophthora...    36   1.2  
UniRef50_Q244X4 Cluster: Putative uncharacterized protein; n=1; ...    35   2.1  
UniRef50_Q08PP5 Cluster: Iron-sulphur-binding reductase; n=2; Cy...    33   6.3  

>UniRef50_A5A602 Cluster: Cellulose synthase 2; n=9;
           Phytophthora|Rep: Cellulose synthase 2 - Phytophthora
           ramorum (Sudden oak death agent)
          Length = 1028

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 134 LPMSLAQSTFTSLSIL*CFFYCLDGWTSWCKWLLETVDIYNVSC 3
           L +  A  T TSL  L C      GW +  KW L+  D+ NV+C
Sbjct: 243 LEVDCATITSTSLETLRCSSQTFSGWFTPPKWYLQIADVENVTC 286


>UniRef50_Q244X4 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 3713

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -1

Query: 396  CVIACELTA*DQILDSCYCHFREGFHYCTTSVGTCE*KCQQTFASHVNTVSHRKPGYALA 217
            C + C L A  +  DSC C   +GF +   S   CE +C Q      +     KPGY   
Sbjct: 2717 CHLICGLNATQKDADSCIC--TKGFKFIEGSNTACEIECGQNTIHVDSNTCQCKPGYEFQ 2774

Query: 216  K 214
            K
Sbjct: 2775 K 2775


>UniRef50_Q08PP5 Cluster: Iron-sulphur-binding reductase; n=2;
           Cystobacterineae|Rep: Iron-sulphur-binding reductase -
           Stigmatella aurantiaca DW4/3-1
          Length = 643

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -1

Query: 318 YCTTSVGTCE*KCQQTFASHVNTVSHRKPGYALAKLIVVNERGKEKAYGPSN-GE*LPSI 142
           Y  T  G C+  C          ++H+     L   +  NER  E+ YGP+   E LP I
Sbjct: 206 YSCTECGRCQTHCPTYITG--KPLTHKAVNQDLKHWLWENERWIEEGYGPTGVKEPLPEI 263

Query: 141 VGTANVVSTI 112
           +G+A    T+
Sbjct: 264 IGSALKAETV 273


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,852,233
Number of Sequences: 1657284
Number of extensions: 12045765
Number of successful extensions: 22894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22892
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)