Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0942
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.0  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    22   5.3  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.9  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   6.9  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   6.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.2  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -1

Query: 366 DQILDSCYCHFREGFH--YCTTSVGTCE 289
           + I +S  CH  +G+   YC T +  C+
Sbjct: 162 EDIGNSHRCHCSDGYSGSYCQTEINECD 189


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 564 DNSPSPQTRVLSSEHE*SQVKSRYLFHSHS 475
           D+S  P   +LS+++    V ++YL   HS
Sbjct: 12  DSSTQPNYLILSNKNNTYLVLNKYLLVKHS 41


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 171 PSNGE*LPSIVGTANVVSTIHFYFIIN 91
           P NG    ++VG A    TI + F +N
Sbjct: 638 PINGSFAFTVVGAATTYITIIYQFQVN 664


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -1

Query: 285 KCQQTFASHVNTVSH----RKPGYALAKLIVVN 199
           K +  F +H +T+ +     KP YA+ KLI +N
Sbjct: 6   KVKSYFTTHHDTLHNIYTSMKPVYAICKLIGLN 38


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -1

Query: 285 KCQQTFASHVNTVSH----RKPGYALAKLIVVN 199
           K +  F +H +T+ +     KP YA+ KLI +N
Sbjct: 6   KVKSYFTTHHDTLHNIYTSMKPVYAICKLIGLN 38


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 280 TFSFARSYAGGTIMETFPEM 339
           TF F   +A GT+ +  P++
Sbjct: 472 TFDFTNGWANGTLAKLSPKV 491


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,124
Number of Sequences: 336
Number of extensions: 3188
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)