Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0942
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   4.5  
SB_59400| Best HMM Match : UPF0160 (HMM E-Value=8.1)                   29   4.5  
SB_20014| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)                29   4.5  

>SB_41418| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 3312

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 330 EGFHYCTTSVGTCE*KCQQTFASHVNTVSHRKPGYALA 217
           E    C T +  CE +C  TF S+  + S   PG+ALA
Sbjct: 578 EDIDECDTGLHKCEHQCNNTFGSYSCSCS---PGFALA 612


>SB_59400| Best HMM Match : UPF0160 (HMM E-Value=8.1)
          Length = 337

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 573 RCADNSPSPQTRVLSSEHE*SQVKSRYLFHSHSCSIHYRMDCNG 442
           R  +  P PQT+  S+  + S+ +  Y F       H R++ NG
Sbjct: 28  RARNPKPLPQTKYTSTSTKRSKTQEMYQFDPRPAKYHQRVNFNG 71


>SB_20014| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)
          Length = 184

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 330 EGFHYCTTSVGTCE*KCQQTFASHVNTVSHRKPGYALA 217
           E    C T +  CE +C  TF S+  + S   PG+ALA
Sbjct: 56  EDIDECDTGLHKCEHQCNNTFGSYSCSCS---PGFALA 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,973,752
Number of Sequences: 59808
Number of extensions: 403025
Number of successful extensions: 935
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)