Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0929
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    27   0.11 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.2  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   9.2  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   9.2  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   9.2  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.2  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 387 TLVCPCFCTEFLTPEPVITMYVTARTYINSDF 482
           T +C  FC  F+T + +  ++VT + Y  S F
Sbjct: 523 TSICKNFCFGFITKQLIFMIFVTYQLYCWSSF 554


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 436 TGSGVKNSVQKHGHTS 389
           TG G+K S Q+HG  S
Sbjct: 15  TGRGLKYSGQQHGPQS 30


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -1

Query: 524 HKICTNFCRK 495
           H++C NFC +
Sbjct: 9   HELCDNFCHR 18


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 402 MDTQACCTVLFFYCLDGXTSS 340
           + T + C   F+YC D   +S
Sbjct: 241 LSTFSICITQFYYCYDSGFNS 261


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 41  DYPSVLKWVRGYGN 82
           D  SVLK++R YG+
Sbjct: 79  DVSSVLKFIRKYGS 92


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -1

Query: 524 HKICTNFCRK 495
           H++C NFC +
Sbjct: 165 HELCDNFCHR 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,098
Number of Sequences: 336
Number of extensions: 3528
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)