Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0929
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    27   2.5  
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    26   4.3  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   5.7  
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    25   7.6  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   10.0 
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    25   10.0 
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    25   10.0 

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 394 TSVLHSTFFLLLRWVXELTAYLVLS-GYWSPWTFIPKMRHPP 272
           TS+L STF L  +    ++ Y       WS    IP++ HPP
Sbjct: 152 TSLLSSTFQLCFQHEFTVSKYASSEESIWSAGIAIPEIAHPP 193


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 321 VVTGAHGHLYRKCATHLEI*VLSLSIVTTAAPPFKPKRI 205
           +V G HG    KC   L+       IV T   P KP+ +
Sbjct: 335 IVIGTHGIFQNKCLKDLQSCEYIEQIVVTNTYPIKPQAV 373


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 227 HPSNRNALLLHGRNRQGGGTYPRGLTRRPTTS 132
           +P++   + L+ ++ Q   TYP+ L  RP+++
Sbjct: 404 YPTSAEQMGLYPQDSQNKDTYPKSLVNRPSSA 435


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 268 DISSKSQYSYNGCPTLQTETHYCFTAEIGRAVVPTRA 158
           D+S  S YS    P +  +  YC +  I   VV  R+
Sbjct: 52  DLSEASVYSEYAIPKIYVKLQYCVSCAIHARVVRVRS 88


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 230 PHPSNRNALLLHGRNRQGGGTYPRGLTRRPTTSN*ANY 117
           PHP N   +LL G N Q   + P     R    N  +Y
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSPLNPYIRTIIKNRRDY 134


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 221 KGGAAVVTILRLRTYISRWVAHFRYKCPWAPV 316
           K G  V+T+L + T +S W   F+    W P+
Sbjct: 268 KMGFQVITVLTILTALSMWYKRFK----WTPI 295


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -2

Query: 268 DISSKSQYSYNGCPTLQTETHYCFTAEIGRAVVPTRA 158
           D+S  S YS    P L  +  YC +  I   VV  R+
Sbjct: 52  DLSEASVYSEYTIPKLYIKLQYCVSCAIHSRVVRVRS 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,328
Number of Sequences: 5004
Number of extensions: 54947
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)