Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0929
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    33   0.21 
08_02_1461 - 27299891-27301870                                         28   7.8  
04_01_0128 + 1398190-1398480,1399245-1399505                           28   7.8  

>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 386 HACVSMFLHRIFNTRTCNNXVCHCKNVYQF*LLIFKLSCKN 508
           H  +++ LH     RTC N + HC+N Y +  LIF  S KN
Sbjct: 353 HGDLNLELHCDITPRTCENFLTHCENGY-YNGLIFHRSIKN 392


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 227 HPSNRNALLLHGRNRQGGGTYPRGLTRRPTTS 132
           H ++    LL GR R GGG + RGL   P  S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313


>04_01_0128 + 1398190-1398480,1399245-1399505
          Length = 183

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 221 SNRNALLLHGRNRQGGGTYPRGLTRRPTTSN 129
           +  NA   HGR        PR ++ RPTT+N
Sbjct: 57  NGNNAEDHHGRQAAAAAVVPRAVSTRPTTTN 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,643,265
Number of Sequences: 37544
Number of extensions: 371665
Number of successful extensions: 698
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)