Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0929
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83116-6|CAB05565.2|  302|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical p...    28   5.3  
U28412-9|AAK71403.2|  251|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF016654-3|AAB66030.1|  348|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z83116-6|CAB05565.2|  302|Caenorhabditis elegans Hypothetical
           protein M01B2.7 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 360 SNKKKVLCSTLVCPCFCTEFLTPEPVITMYVTARTYINSDF*F-SNFPAKISA 515
           SNK + +C+ L+C C   + L    VI   V+  T    +F F  + PA   A
Sbjct: 33  SNKLRSICNILICVCCFCDLLLFTDVIAFVVSMFTPSTQEFCFYISIPADFGA 85


>Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical
           protein T26E4.15 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 360 SNKKKVLCSTLVCPCFCTEFLTPEPVITMYVTARTYINSDF*F-SNFPAKISA 515
           SNK + +C+ L+C C   + L    VI   V+  T +  +  F  + PA   A
Sbjct: 33  SNKLRSICNILICVCCFCDLLLFTDVIAFVVSMLTPLTQELCFYISIPADFGA 85


>U28412-9|AAK71403.2|  251|Caenorhabditis elegans Hypothetical
           protein T19C3.7 protein.
          Length = 251

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 388 VLHSTFFLLLRWVXELTAYLVLSGYWSPWTFIPKMRHPP*DISSKSQYSY 239
           +L+  FFLL  W  +  A L  +     +  +PK+R  P +     ++ Y
Sbjct: 147 ILYKDFFLLTTWKIDKYAQLRKNAAVQAYNSLPKLRADPAEFRCHVEFQY 196


>AF016654-3|AAB66030.1|  348|Caenorhabditis elegans Hypothetical
           protein C17A2.4 protein.
          Length = 348

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = -2

Query: 334 YLVLSG-YWSPWTFIPKMRHPP*DISSKSQYSYNGCPTLQTETHY-CFTAEIG 182
           YL L+G ++  W + P MR    D    S   +   P     TH  C  A  G
Sbjct: 124 YLHLTGMFYQSWKYFPNMREQLLDFLDDSSQDFGNLPRSNQRTHVTCVHARRG 176


>AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical
           protein F31F4.17 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -2

Query: 334 YLVLSG-YWSPWTFIPKMRHPP*DISSKSQYSYNGCPTLQTETH 206
           YL LSG ++  W + PK+++      + S  ++   P    +TH
Sbjct: 178 YLHLSGIFYQSWKYFPKVKNELASFLNNSSQNFGNLPISTNKTH 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,224,817
Number of Sequences: 27780
Number of extensions: 322607
Number of successful extensions: 587
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)