Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0929
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 26 NCKPFDYPSVLKWVRGY 76
          NCK +D+P+ L  ++ Y
Sbjct: 34 NCKNYDHPTTLLKLKRY 50


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = +3

Query: 24  VIVNHSIIRQF*NGYVVMATPSSVSC 101
           +I+   ++  + N ++++ATP++V+C
Sbjct: 555 IILLAGVLVCYLNTFLLLATPTTVTC 580


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 111 EVVYMKRYSGLP 76
           +V+Y+KR+ GLP
Sbjct: 255 KVIYVKRFFGLP 266


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 111 EVVYMKRYSGLP 76
           +V+Y+KR+ GLP
Sbjct: 255 KVIYVKRFFGLP 266


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -3

Query: 111 EVVYMKRYSGLP 76
           +V+Y+KR+ GLP
Sbjct: 255 KVIYVKRFFGLP 266


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = +3

Query: 24  VIVNHSIIRQF*NGYVVMATPSSVSC 101
           +I+   ++  + N ++++ATP++V+C
Sbjct: 645 IILLAGVLVCYLNTFLLLATPTTVTC 670


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,049
Number of Sequences: 438
Number of extensions: 4306
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)