Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0927
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    93   1e-20
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    28   0.53 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   0.70 
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    25   3.8  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   6.6  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    24   8.7  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    24   8.7  
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po...    24   8.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 93.5 bits (222), Expect = 1e-20
 Identities = 43/67 (64%), Positives = 54/67 (80%)
 Frame = +1

Query: 220 KNRQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 399
           K +   E  L  LPIKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 400 NGHIWFG 420
           +GH+  G
Sbjct: 107 DGHVGLG 113



 Score = 48.8 bits (111), Expect = 4e-07
 Identities = 19/31 (61%), Positives = 26/31 (83%)
 Frame = +2

Query: 161 KEDQXEWVPVTKLGRLVREGKIDKLESIYLF 253
           ++++ EWVPVTKLGRLV+ GKI  +E IYL+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLY 58


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 0.53
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 269 NSRSLISSSARP*MMRFLRSCLYRNKHVPDSAHVSRH 379
           +SR+ I S+     +++L S   R KH+P+   ++RH
Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 158 RAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPP 33
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 199 RPSCSRRKNRQTREHLLVFLPIKEFEIIDFFLGPSLNDE 315
           R    +++NR+T +  LV   +      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 266 KNSRSLISSSARP*MMRFLRSCLYRNK 346
           K SR+    S  P MMRF+  C++  K
Sbjct: 38  KRSRNAQGFSLEPIMMRFIELCVHLRK 64


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 339 LYRHDLKN--LIIQGRAEEEINDLEFFDW*KNK*MLSSL 229
           + R +L N  LI++    EEI+D +F D   N  +++SL
Sbjct: 846 IQRTNLSNTVLILKSLGVEEISDFDFMDRPPNDTLMASL 884


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +1

Query: 274 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 405
           E    F G  +  E + ++P       G  TRF   V   D NG
Sbjct: 378 ETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTRFTGEVLTIDENG 421


>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 345 LFLYRHDLKNLIIQGRAEEEINDLE 271
           L +Y   L+NL+ QG+A E +N ++
Sbjct: 361 LQVYHEKLRNLVQQGQAAECLNTIK 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,457
Number of Sequences: 5004
Number of extensions: 28423
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)