Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0927
(431 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 83 7e-17
07_01_0756 + 5819367-5820038,5820847-5821005 79 1e-15
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 33 0.13
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 2.8
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 27 4.9
04_03_0141 + 11767781-11767880,11767953-11769262 27 4.9
06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979 27 8.6
05_06_0155 - 26028923-26030263 27 8.6
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 27 8.6
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 27 8.6
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 83.4 bits (197), Expect = 7e-17
Identities = 37/55 (67%), Positives = 45/55 (81%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFG 420
LP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+ G
Sbjct: 70 LPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLG 123
Score = 48.0 bits (109), Expect = 3e-06
Identities = 18/30 (60%), Positives = 26/30 (86%)
Frame = +2
Query: 161 KEDQXEWVPVTKLGRLVREGKIDKLESIYL 250
++++ +WVPVTKLGRLV+EG+ K+E IYL
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYL 67
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 79.4 bits (187), Expect = 1e-15
Identities = 38/67 (56%), Positives = 48/67 (71%)
Frame = +1
Query: 220 KNRQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 399
K + E L LP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 400 NGHIWFG 420
+GH+ G
Sbjct: 120 DGHVGLG 126
Score = 48.0 bits (109), Expect = 3e-06
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = +2
Query: 161 KEDQXEWVPVTKLGRLVREGKIDKLESIYL 250
++++ +WVPVTKLGRLV+E KI K+E IYL
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYL 70
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 32.7 bits (71), Expect = 0.13
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 307 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFG 420
++ V+++ V K + G++ F+A V +GD GH+ G
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVG 208
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 116 DRHGLYLHRVIRIRRENRHVHRLEQRPP 33
D HGL+ + + RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -1
Query: 167 LPCRAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPPLLNDGL 15
L C AH G D H L + +R R+ + +RL +R PL+++ L
Sbjct: 1048 LCCLAHALGEDFTIFVSSIHKLLVKHHMRYRKWDEIENRLLRREPLISENL 1098
>04_03_0141 + 11767781-11767880,11767953-11769262
Length = 469
Score = 27.5 bits (58), Expect = 4.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 191 TKLGRLVREGKIDKLESIYLFFYQSKNSRSLISSSARP 304
T++G L + ++ LES F Y + S SSSARP
Sbjct: 428 TRVGTL--DSRVQMLESSQAFVYHGRRDASHPSSSARP 463
>06_01_0435 + 3092910-3093392,3093938-3094196,3094636-3094979
Length = 361
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 146 HGRDHDRVHEDRHGLYLH 93
H RDH R+ HG YLH
Sbjct: 5 HDRDHVRLRSRVHGTYLH 22
>05_06_0155 - 26028923-26030263
Length = 446
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 184 SCHQTRPSCSRRKNRQTREHLLVFLPIKEFEIIDFFLGPSLN 309
SCH P R N RE+L +P + D F +L+
Sbjct: 52 SCHSNVPELIRAMNAPLREYLRSSVPSARAVVFDMFCACALD 93
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 197 LGRLVREGKIDKLESIYLFFYQSKNSRSLISSSA 298
L +++ EGK+DK+E ++ F S ++R ++ A
Sbjct: 13 LFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKA 46
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 197 LGRLVREGKIDKLESIYLFFYQSKNSRSLISSSA 298
L +++ EGK+DK+E ++ F S ++R ++ A
Sbjct: 13 LFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKA 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,794,624
Number of Sequences: 37544
Number of extensions: 198007
Number of successful extensions: 587
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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