Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0927
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)              109   1e-24
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   30   0.71 
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      29   1.6  
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.6  
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_52533| Best HMM Match : rve (HMM E-Value=2)                         29   1.6  
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)                  29   1.6  
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)                     29   1.6  
SB_33388| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  

>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  109 bits (262), Expect = 1e-24
 Identities = 52/65 (80%), Positives = 58/65 (89%), Gaps = 1/65 (1%)
 Frame = +1

Query: 229 QTREHLLVF-LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 405
           +T EH+ +F LPIKEFEIIDFFLG +L DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NG
Sbjct: 24  KTLEHIYLFSLPIKEFEIIDFFLGAALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNG 83

Query: 406 HIWFG 420
           H+  G
Sbjct: 84  HVGLG 88



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 19/25 (76%), Positives = 21/25 (84%)
 Frame = +2

Query: 179 WVPVTKLGRLVREGKIDKLESIYLF 253
           WVPVTKLGRLV++ KI  LE IYLF
Sbjct: 8   WVPVTKLGRLVKDLKIKTLEHIYLF 32


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -1

Query: 203 GRVW*QEPTLSGLPCRAHDHGRDHDRVHEDRHGLYLH 93
           G +W +   L  LP     H  DHDR H  RH   +H
Sbjct: 103 GFLWQKNGVLLSLPPPQFRHSHDHDRHHYHRHHNNIH 139


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 307 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFGC 423
           N  +LK++ +  Q +A  +  F+ FVA   +  H   GC
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 193


>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 307 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFGC 423
           N  +LK++ +  Q +A  +  F+ FVA   +  H   GC
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 849


>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 307  NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFGC 423
            N  +LK++ +  Q +A  +  F+ FVA   +  H   GC
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 2046


>SB_52533| Best HMM Match : rve (HMM E-Value=2)
          Length = 212

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 307 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFGC 423
           N  +LK++ +  Q +A  +  F+ FVA   +  H   GC
Sbjct: 95  NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 133


>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
          Length = 212

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 307 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFGC 423
           N  +LK++ +  Q +A  +  F+ FVA   +  H   GC
Sbjct: 9   NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 47


>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
          Length = 735

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 307 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFGC 423
           N  +LK++ +  Q +A  +  F+ FVA   +  H   GC
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTGC 570


>SB_33388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -1

Query: 296 PRKKSMISNSLIGKKTSKCSRVCRFFLREQDGRVW*QEPTLSGLPC 159
           PR  +++ N+L+G    +C +V  + + +++  V    P +   PC
Sbjct: 299 PRPSTVLHNTLVGVGIGECRKVFCYDVEDKETYVLPDLPQVQAFPC 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,457
Number of Sequences: 59808
Number of extensions: 231577
Number of successful extensions: 752
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)