Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0927
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    83   1e-16
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of...    27   5.8  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 45/68 (66%), Positives = 49/68 (72%)
 Frame = +1

Query: 217 RKNRQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 396
           +K     E  L  LPIKEFEIID  L  +L DEVLKI PVQKQT AGQRTRFKAFVAIGD
Sbjct: 70  KKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGD 128

Query: 397 NNGHIWFG 420
           + GH+  G
Sbjct: 129 HAGHVGLG 136



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 20/29 (68%), Positives = 22/29 (75%)
 Frame = +2

Query: 164 EDQXEWVPVTKLGRLVREGKIDKLESIYL 250
           E + EW PVTKLGRLV+E KI  LE IYL
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYL 80


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 384 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 298
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 384 NKCLETCALSGTCLFLYR-HDLKNLIIQGR 298
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z66523-7|CAA91416.2|  409|Caenorhabditis elegans Hypothetical
           protein M05D6.7 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 194 KLGRLVREGKIDKLESIYLFFYQSKNSRSL 283
           K+G ++REGK++K  S     Y+  NS+SL
Sbjct: 107 KIGNIIREGKVEKNVSNDNKIYELWNSKSL 136


>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
           protein T01E8.3 protein.
          Length = 1299

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -2

Query: 262 LVKKQVNALEFVDFSFANKTAEFGDRN-PLXLVF 164
           L   +  ALEF++  F    A FGDRN P   VF
Sbjct: 245 LASNRTRALEFLNRYFQEDQAYFGDRNEPSMTVF 278


>AC006790-7|AAF60731.1|  547|Caenorhabditis elegans Suppressor of
           mec and unc defectsprotein 2 protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 158 RAHDHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQR 39
           R+ D  RD DR + DR   Y  +    RRE     R +QR
Sbjct: 354 RSRDRDRDRDRDNRDR---YFEKSANSRREEEQNRREQQR 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,055,022
Number of Sequences: 27780
Number of extensions: 169218
Number of successful extensions: 571
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)