Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0927
(431 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 97 6e-21
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 96 8e-21
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 95 2e-20
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 95 2e-20
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 95 2e-20
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 95 2e-20
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 36 0.016
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 30 0.78
At4g09600.1 68417.m01579 gibberellin-regulated protein 3 (GASA3)... 29 1.4
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 1.4
At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 29 1.8
At3g63100.1 68416.m07087 glycine-rich protein 28 3.1
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 3.1
At5g45700.1 68418.m05618 NLI interacting factor (NIF) family pro... 27 5.5
At5g38386.1 68418.m04638 F-box family protein contains F-box dom... 27 5.5
At1g07550.1 68414.m00808 leucine-rich repeat protein kinase, put... 27 5.5
At5g47430.1 68418.m05844 expressed protein 27 7.2
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 7.2
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 7.2
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 7.2
At4g14096.1 68417.m02176 F-box family protein contains F-box dom... 27 7.2
At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger) fa... 27 7.2
At3g58810.2 68416.m06555 zinc transporter, putative similar to z... 26 9.6
At3g58810.1 68416.m06554 zinc transporter, putative similar to z... 26 9.6
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 26 9.6
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 26 9.6
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 26 9.6
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 96.7 bits (230), Expect = 6e-21
Identities = 42/65 (64%), Positives = 52/65 (80%)
Frame = +1
Query: 226 RQTREHLLVFLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNG 405
+Q + L LP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NG
Sbjct: 70 KQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNG 129
Query: 406 HIWFG 420
H+ G
Sbjct: 130 HVGLG 134
Score = 41.1 bits (92), Expect = 3e-04
Identities = 17/28 (60%), Positives = 22/28 (78%)
Frame = +2
Query: 167 DQXEWVPVTKLGRLVREGKIDKLESIYL 250
++ +WVPVTKLGRLV G I ++E IYL
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYL 77
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 96.3 bits (229), Expect = 8e-21
Identities = 40/55 (72%), Positives = 49/55 (89%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFG 420
LP+KE++IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+ G
Sbjct: 71 LPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLG 125
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +2
Query: 167 DQXEWVPVTKLGRLVREGKIDKLESIYL 250
++ +WVPVTKLGRLV+EGKI K+E IYL
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYL 68
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 94.7 bits (225), Expect = 2e-20
Identities = 40/55 (72%), Positives = 48/55 (87%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFG 420
LP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+ G
Sbjct: 79 LPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 133
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 167 DQXEWVPVTKLGRLVREGKIDKLESIYL 250
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 94.7 bits (225), Expect = 2e-20
Identities = 40/55 (72%), Positives = 48/55 (87%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFG 420
LP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+ G
Sbjct: 79 LPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 133
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 167 DQXEWVPVTKLGRLVREGKIDKLESIYL 250
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 94.7 bits (225), Expect = 2e-20
Identities = 40/55 (72%), Positives = 48/55 (87%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFG 420
LP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+ G
Sbjct: 79 LPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 133
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 167 DQXEWVPVTKLGRLVREGKIDKLESIYL 250
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 94.7 bits (225), Expect = 2e-20
Identities = 40/55 (72%), Positives = 48/55 (87%)
Frame = +1
Query: 256 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFG 420
LP+KE++IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+ G
Sbjct: 79 LPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLG 133
Score = 44.8 bits (101), Expect = 3e-05
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = +2
Query: 167 DQXEWVPVTKLGRLVREGKIDKLESIYL 250
++ +WVPVTKLGRLV + KI KLE IYL
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYL 76
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 35.5 bits (78), Expect = 0.016
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 310 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIWFGC 423
+ V+++ V K + G++ +F+A V +GD G++ GC
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGC 186
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 29.9 bits (64), Expect = 0.78
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -1
Query: 356 PARVCFCTGMILRTSSFRDGPRKKSMISNSLIGKKTSK 243
P R FC+G+ +S + PR+KS +S+ L KK K
Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKLRFKKIEK 80
>At4g09600.1 68417.m01579 gibberellin-regulated protein 3 (GASA3) /
gibberellin-responsive protein 3 identical to SP|P46687
Gibberellin-regulated protein 3 precursor {Arabidopsis
thaliana}
Length = 99
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 287 SSSARP*M-MRFLRSCLYRNKHVPDSAHVSRHLLPLATTTVIFGLGVKC 430
S S+RP + +R SC YR VP + HL P + G +KC
Sbjct: 50 SKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKC 98
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 1.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 152 HDHGRDHDRVHEDRHGLYLH 93
HDH DHD H D H + H
Sbjct: 320 HDHNHDHDHHHHDGHDHHHH 339
>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
Pisum sativum, EMBL:AF004843
Length = 411
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 9 VSEPIVQQWRTLLQP 53
VS PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -1
Query: 146 HGRDH----DRVHEDRHGLYLHRVIRIRRENRHVH 54
HGRDH DR H HG + HR R R H H
Sbjct: 109 HGRDHRHGRDRGHHRGHGHHHHRGHRRGRGRGHGH 143
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 152 HDHGRDHDRVHEDRHG-LYLHRVIRIRRENRHVHRL 48
HDHG HD H HG Y R ++ +++ + +
Sbjct: 158 HDHGHGHDHGHSHDHGHSYGERAEQLLEKSKEIRNI 193
>At5g45700.1 68418.m05618 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 272
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 423 TPKPNMTVVVANGNKCLETCALSGTCLFLYRHDLKNLII 307
+P P T V+A NK + C + CLF RH K I
Sbjct: 33 SPSPATTTVIATINKSIYRCHRTFLCLF-SRHATKGFKI 70
>At5g38386.1 68418.m04638 F-box family protein contains F-box domain
Pfam:PF00646
Length = 403
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -1
Query: 305 RDGPRKKSMISNSLIGKKTSKCSRVCRFFLREQDGR 198
R+ P ++++ +L+ T KC C RE+ GR
Sbjct: 288 RNCPHLETLVLEALLHHVTDKCGDACACVSREEKGR 323
>At1g07550.1 68414.m00808 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 864
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 417 KPNMTVVVANGNKCLETC 364
+PNM+ VV N+CLETC
Sbjct: 817 RPNMSQVVHVLNECLETC 834
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 149 DHGRDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPP 33
+H R DR EDR + H R H HR PP
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 140 RDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPP 33
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 140 RDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPP 33
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 140 RDHDRVHEDRHGLYLHRVIRIRRENRHVHRLEQRPP 33
RDHDR +DR G R R R ++R R R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164
>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
Pfam:PF00646
Length = 468
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 305 RDGPRKKSMISNSLIGKKTSKCSRVCRFFLREQ 207
++ P +++I LI K T KC VC RE+
Sbjct: 337 KNSPNLETLIFQGLIHKATDKCGDVCLCKPREE 369
>At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 357
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 167 LPCRAHDHGRD--HDRVHEDRHGLYLHRVIRI 78
LP +H H + HDR+H D H L H V +I
Sbjct: 69 LPSCSHHHIQSLLHDRLHRDDHWLCDHLVPKI 100
>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 393
Score = 26.2 bits (55), Expect = 9.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 152 HDHGRDHDRVHEDRHG 105
HDHG H H++ HG
Sbjct: 198 HDHGHGHGHSHDNGHG 213
>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
transporter 4; ZnT4 [Mus musculus]
gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
[Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
the cation diffusion facilitator (CDF) family, or cation
efflux (CE) family, PMID:11500563
Length = 432
Score = 26.2 bits (55), Expect = 9.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 152 HDHGRDHDRVHEDRHG 105
HDHG H H++ HG
Sbjct: 237 HDHGHGHGHSHDNGHG 252
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 213 AKEKSTNSRAFTCFFTNQRIRD 278
AKE+ N+ AF C FT R+ D
Sbjct: 720 AKEQGKNNVAFLCLFTLGRLED 741
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 213 AKEKSTNSRAFTCFFTNQRIRD 278
AKE+ N+ AF C FT R+ D
Sbjct: 720 AKEQGKNNVAFLCLFTLGRLED 741
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 213 AKEKSTNSRAFTCFFTNQRIRD 278
AKE+ N+ AF C FT R+ D
Sbjct: 720 AKEQGKNNVAFLCLFTLGRLED 741
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,518,928
Number of Sequences: 28952
Number of extensions: 156610
Number of successful extensions: 521
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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