Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0926
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   0.75 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.7  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.0  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   4.0  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   7.0  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   7.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 295  DTKPAPKQTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSS 426
            + KP  K +  S ++P +P     S+T    T  T   TTR ++
Sbjct: 1154 EKKPGHKPSTSSWQKPTKPSYRPPSTTNHWQTKTTTSTTTRPTT 1197


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 400 QPKTTRKSSVKLDVKPPEARKSLKSSDKLETSKQ 501
           + KTTRKSS + +  P   R +  ++  LE  K+
Sbjct: 120 EKKTTRKSSQQENGLPRRLRTAYTNTQLLELEKE 153


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 340 PKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKLDVKPPEA 456
           P  P  S  + T   T   T+P T   +   +  KPP+A
Sbjct: 160 PLPPTTSTTTRTTLTTKFTTKPSTKPTNKPVVVTKPPQA 198


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 1/95 (1%)
 Frame = +1

Query: 292 IDTKPAPKQTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKLDVKPPEARKSLK 471
           + T P  K    +T +      S  SST S   A T    ++ S       PP+    +K
Sbjct: 149 VSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQ---SSNPPQIYPWMK 205

Query: 472 SSD-KLETSKQTTESRRKGTPXTEASRARENEETH 573
                  T     E++R+ T  T        +E H
Sbjct: 206 RVHLGQSTVNANGETKRQRTSYTRYQTLELEKEFH 240


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 2    GTSRTKETKLIKPQRKSLADKRKTLSSVAKRKSSGRPTISSHKTN 136
            G++ +    +   ++KSLA  ++ +S    R S  RP++     N
Sbjct: 1402 GSTSSNNPSISAFRKKSLAYVQQRMSIAPNRVSQARPSVQLRYPN 1446


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 2    GTSRTKETKLIKPQRKSLADKRKTLSSVAKRKSSGRPTISSHKTN 136
            G++ +    +   ++KSLA  ++ +S    R S  RP++     N
Sbjct: 1402 GSTSSNNPSISAFRKKSLAYVQQRMSIAPNRVSQARPSVQLRYPN 1446


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 473 PLTNSKLPNKRQSQGEKEHRPQRRPVPEKMRK 568
           P TN+++     ++   ++R   +P+ EK R+
Sbjct: 16  PTTNNQIEMAAATKRVSDNRRSNKPIMEKRRR 47


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 626 KMADPIHFRRCTP 664
           ++ DPI+ R+C P
Sbjct: 143 RITDPINIRKCKP 155


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = -2

Query: 120 EIVGLPEDFL 91
           +++GLPEDFL
Sbjct: 124 KMIGLPEDFL 133


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 425 ASNSTLNLQKPGSHSNPLTNSKLPNKRQSQG 517
           ASN  +     GS  N LTN+   N   S G
Sbjct: 56  ASNGLVTTLASGSSLNGLTNNVPSNGLSSSG 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,294
Number of Sequences: 336
Number of extensions: 3075
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)