Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0926
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 35 0.012
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 32 0.087
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.12
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 31 0.20
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 29 0.61
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 29 0.61
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 29 0.81
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.1
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 28 1.1
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 28 1.1
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 28 1.4
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 28 1.4
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 1.9
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 1.9
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 27 2.5
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 3.3
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 27 3.3
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 27 3.3
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 4.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 4.3
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 5.7
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 26 5.7
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 5.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 5.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 7.6
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 25 7.6
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz... 25 7.6
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 7.6
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 7.6
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 10.0
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 10.0
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 10.0
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 10.0
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 10.0
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 25 10.0
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 25 10.0
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 10.0
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 25 10.0
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 34.7 bits (76), Expect = 0.012
Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 3/184 (1%)
Frame = +2
Query: 14 TKETKLIKPQRKSLADKR---KTLSSVAKRKSSGRPTISSHKTNPSPAKQLKKRTTEIEH 184
T+E L+ PQ L++K K+ + V K G ISS+ + +P L +
Sbjct: 230 TREVLLLPPQTSKLSNKNLDTKSFTDVNKISQQGFVEISSNSSKVTPNTSLHQSFGIASS 289
Query: 185 RCDCGQLFSSAALLSRHTTLAHTPLGYANDVLHRLRLIRSLPRNKHANPQKGQSNLSALG 364
+ SS S PL +N L + L++S K Q ++S G
Sbjct: 290 SSNNYMQTSSELTSSTEKMNGSHPLQLSNKSLLSIHLMQS----------KNQGHVSMTG 339
Query: 365 SRALGAIPLLRPNLKLPESPASNSTLNLQKPGSHSNPLTNSKLPNKRQSQGEKEHRPQRR 544
S L + P+ +TL PL ++KLP + GE P+
Sbjct: 340 SDKLSSHVQSETENAPVSKPSKPNTLT-----EDEKPLQSTKLPGNSLTVGELYQEPKSI 394
Query: 545 PVPE 556
+PE
Sbjct: 395 QLPE 398
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 31.9 bits (69), Expect = 0.087
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Frame = +1
Query: 346 QPVGSRKSSTRSD-TTAPTQPKTTRKSSVKLDVKPPEARKSLKSSD------KLETSKQT 504
QP+ + +S +++PT+ TTRKS +V+PP K +KSS K E +
Sbjct: 433 QPLSKDTEAPKSQFSSSPTKESTTRKS----EVEPPSPSKEIKSSHFSVPEFKFEPKTEA 488
Query: 505 TESRRKGTPXTE 540
T ++ P E
Sbjct: 489 TTDKKLNVPKFE 500
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 319 TRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKLDV 441
TRKS P P KSS S +PKT + KL+V
Sbjct: 456 TRKSEVEPPSPSKEIKSSHFSVPEFKFEPKTEATTDKKLNV 496
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 31.5 bits (68), Expect = 0.12
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 295 DTKPAPK-QTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKLDVKPPEARKSLK 471
D K A K Q K T+ KQ ++ +T+ DT + T K S KL E +LK
Sbjct: 28 DKKLATKPQKSKLTKLGKQKQRQKQKNTKKDTLVNRE--TPSKKSQKL-----ETSDALK 80
Query: 472 SSDKLETSKQTTESRRKGTP 531
S K + K+ +KGTP
Sbjct: 81 SKSKDSSKKEPVVVPKKGTP 100
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 295 DTKPAPKQTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSS 426
D+KP QTR +T +P QP + ++++S + T T +SS
Sbjct: 141 DSKPVVHQTR-ATRKPAQPKAEKSTTSKSKSHTTTATTHTSRSS 183
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 29.1 bits (62), Expect = 0.61
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +2
Query: 11 RTKETKLIKPQRKSLADKRKTLSSVAKRKSSGRPTISSHKTNPSPAKQLKKRTTEI 178
R + + ++ +R +K+ +S +A ++SS + + T PSPA + +T++
Sbjct: 51 RELKKRKLEEERLKYEEKKLRISRLANKESSRNEELLTETTTPSPAVKASPASTKL 106
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 29.1 bits (62), Expect = 0.61
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Frame = +1
Query: 301 KPAPKQTRKSTERPKQPVGSRKSSTRSDTTAPTQP----KTTRKSSVKLDV--------K 444
KP+ KST+ P P ++ + T++P+ P K T++S +L V K
Sbjct: 643 KPSKNNILKSTQVPVTPKQKSSTANKGSTSSPSPPSSESKKTKRSWGRLFVSGDSDKEHK 702
Query: 445 PPEARKSLKSSDKLETSKQTTESRRK 522
+ K K +D++ +S ++ S +K
Sbjct: 703 EHKKDKQKKKNDQISSSSKSASSFKK 728
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 28.7 bits (61), Expect = 0.81
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 319 TRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTR 417
T+ T+ PK S KSS S + PT PK ++
Sbjct: 423 TKLETKTPKHASSSHKSSIMSVNSDPTSPKVSK 455
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 38 PQRKSLADKRKTLSSVAKRKSSGRPTISSHKTNPSPAKQL--KKRTTE 175
P+ K++ ++ + LS + K K T S+H PSP Q+ K+ TT+
Sbjct: 752 PEAKTVLEQHR-LSEMRKTKKQTELTNSAHVIKPSPTPQITVKQNTTK 798
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 308 PRNKHANPQKGQSNLSALGSRALGAIPLLRPNLKLPESPASNSTLNLQKPGSHS 469
PR + K LS L R + I + + K+ ES + S LNL P SHS
Sbjct: 168 PRKREGENNKKVELLSILDERGIRYINMFS-SYKIGESDSLKSALNLGVPISHS 220
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/87 (25%), Positives = 38/87 (43%)
Frame = +1
Query: 307 APKQTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKLDVKPPEARKSLKSSDKL 486
A + E P +K++ R + + K TR +VK ARK +S+ K
Sbjct: 558 ATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKS 617
Query: 487 ETSKQTTESRRKGTPXTEASRARENEE 567
+ + Q+T + TEA + +NE+
Sbjct: 618 DKNTQSTLLFYDPSSTTEA-QYLDNED 643
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/88 (23%), Positives = 36/88 (40%)
Frame = +2
Query: 92 RKSSGRPTISSHKTNPSPAKQLKKRTTEIEHRCDCGQLFSSAALLSRHTTLAHTPLGYAN 271
R+ +P S T P P LKK+ + E R D G L +++ +++ + + +
Sbjct: 16 RQPDQQPIQDSICTLPGPGSLLKKKIRKTEFRIDNGLLGNTSPIINVESKIPFHRRANST 75
Query: 272 DVLHRLRLIRSLPRNKHANPQKGQSNLS 355
R R+ SL N A + S
Sbjct: 76 PEESRKRVSFSLTSNDGAKSDRSSQKSS 103
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 27.9 bits (59), Expect = 1.4
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Frame = +1
Query: 307 APKQTRK---STERPKQPVGSRKSSTRSDTTAPTQ-PKTTRKSSVKLDVKPPEARKSLKS 474
APK T+ S K P ++ ++ + + T PK T +S+ K PP KS
Sbjct: 127 APKSTKPISISLGGTKAPTTTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETPTKS 186
Query: 475 SDK--LETSKQTTESRRKGTPXTEASRARENEETHAKIEIIMVLTRDV 612
+D +T + +K E + E + T + E+ L +D+
Sbjct: 187 ADAELAKTPSAPAAALKKAAEAAEPATVTE-DATDLQNEVDQELLKDM 233
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +1
Query: 334 ERPKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKLDVKPPEARKSLKSSDKLETSKQTTES 513
+R ++ + +R + TRS+++ P Q ++ SS+ +D + + + E S + S
Sbjct: 554 QRFQEEMENRMNQTRSESSTPAQ-QSAAGSSINVDTAGRQPSDEINIPGEYENSSEVAGS 612
Query: 514 RRKGTP 531
R + TP
Sbjct: 613 RNQ-TP 617
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 301 KPAPK-QTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKL--DVKPPEARKSLK 471
+P PK T T P + SS RS +A T K + ++S + KP A+ +
Sbjct: 636 QPQPKISTVSDTAVPSMSFANNISS-RSVISAATDSKPSTRTSPPFVNNTKPIVAKSPVT 694
Query: 472 SSDKLETSKQTTESRRKGTP 531
+ ET+K++ + +K +P
Sbjct: 695 VTASSETNKKSQKINKKASP 714
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 308 PRNKHANPQKGQSNLSALGSRALGAIPLLRPNLKLPESPAS 430
P N + L+ G R A PL +P+LK PESP S
Sbjct: 32 PLNNLVRSRLSDGALNFTGGRI--ATPLPQPSLKTPESPLS 70
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 439 VKPPEARKSLKSSDKLETSKQTTESRRKGTP---XTEASRARENEETHAKI 582
+ PP++ KSS+ ++ + T+S+ + +P T S A E+H +
Sbjct: 1283 IAPPKSSNEKKSSNNVKAVEAETKSKSEKSPKKNGTNISDANNKNESHVSL 1333
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Frame = +1
Query: 364 KSSTRSDTTAPTQPKTTRKSSVKLDVKP-----PEARKSLKSSDKLETSKQTTESRRKGT 528
K S T+P +P T+ S +P P ++ + + TS Q +
Sbjct: 163 KFSPNPTQTSPGKPSTSESSQTDTSTRPANSQTPTTTRASSYTTLVSTSNQVSNEAEASA 222
Query: 529 PXTEASRARENEE 567
T A++A+ E+
Sbjct: 223 VETSANQAQNTED 235
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 472 SSDKLETSKQTTESRRKGTPXTEASRARENEET 570
SSD+ ++K S+R+GTP + N ET
Sbjct: 233 SSDESCSNKTVASSQRRGTPGSNNVHTASNNET 265
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 301 KPAPKQTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKLDVKPPEA 456
+PA T + P +P+ K T T P +++K DVKPP A
Sbjct: 329 EPAKGNTMSFSWTPDKPI---KFDTPEKKFTFTNPLSSKKLPASSDVKPPSA 377
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +1
Query: 310 PKQTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTR--KSSVKLDVKPPEARKSLKSS-- 477
P+ K E P ++++ ++ TA T +T K DV + +K S
Sbjct: 913 PEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTADVNDDVGEEEVKQSVS 972
Query: 478 DKLETSKQTTESRRKGTPXTEASRA 552
+++++++ T+E + + P + ++
Sbjct: 973 EQVDSAQLTSEPKSESLPKSPEEKS 997
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +1
Query: 442 KPPEARKSLKSSDKLETSKQTTESRRKGTPXTEASRARENEETHAKIEIIMVLTRDVSRT 621
KP + KSS K++ + ES + E EN+E A I V ++D T
Sbjct: 34 KPEKKDDKEKSSKKVQKKNKVIESLNEMEVEMEDENENENDEQEAIQYYINVESQDADET 93
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 355 GSRKSSTRSDTTAPTQPK--TTRKSSVKLDVKPPEARKSLKSSDKL 486
GSR+++T+ AP QPK + + LD +P A+ +S L
Sbjct: 254 GSRRTTTKQSDKAPEQPKQESAMIDLLGLDNEPSPAQPQTNTSAPL 299
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 5.7
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = +1
Query: 295 DTKPAPKQTRKSTERPKQPVGSRKSSTR---SDTTAPTQPKTTRKSSVKLDVKPPEARKS 465
+TK PK+++K T + +Q S + + S + T T +++S + A
Sbjct: 553 ETKSTPKKSKKKTSKAQQEANSTTAEGKEKLSGDSTETGNSTNKEASTEDTKANATASAP 612
Query: 466 LKSSDKLETSKQTT--ESRRKGTP 531
K +ET +Q E RK P
Sbjct: 613 NKKKKTVETLQQQVIKEIARKEIP 636
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.7
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +1
Query: 313 KQTRKSTERPKQPVGSRK---SSTRSDTTAPTQPKTTRKSSVKLDVKPPEARKSLKSSDK 483
K + + +RP G + SS+ S ++ + SS D+ PP + S+ +
Sbjct: 276 KTAKPTYKRPGMGPGGKDATASSSSSFSSKREEAAAEPSSSTATDIPPPYSTPSVAGASD 335
Query: 484 LETSKQTTESRRKGTPXTEASRAR 555
T ++ + T TEA+ A+
Sbjct: 336 YSTPSAGYQTVQTTTTTTEAAAAQ 359
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 413 PESPASNSTLNLQKPGSHSNPLTNSKLPNKRQSQ 514
P PA+++T+N P S ++P + + P+ QS+
Sbjct: 211 PYPPANDTTVNSSLPHSFASPSSTFEQPHTVQSR 244
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 428 SNSTLNLQKPGSHSNPLTNSKL 493
SNS LN + P S S+PL N L
Sbjct: 248 SNSGLNPRSPNSFSSPLDNPAL 269
>SPCC1393.11 |||mitochondrial ribosomal protein subunit
L20|Schizosaccharomyces pombe|chr 3|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +1
Query: 310 PKQTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKLDVKPPEARKSLKSSDKLE 489
PKQ + +RPK P+GS+ + T+A P SS + + PP R + +
Sbjct: 26 PKQ--RIPKRPKIPMGSKIAEVTETTSAYYNPPA---SSPDVRITPPVFRYDAPPIHQRD 80
Query: 490 TS 495
TS
Sbjct: 81 TS 82
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 17 KETKLIKPQRKSLADKRKTLSSVAKRKSSGR--PTISSHKTNPSPAKQLKKRTTEIE 181
+E K K Q + A K T S K+K SG+ P PA+++ E+E
Sbjct: 655 EEAKRQKVQAEREAAKAATKSEAEKQKPSGKFEEGTGGRAPPPPPAEEVAPENEEVE 711
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 457 RKSLKSSDKLETSKQTTESRRKGTPXTEASRARENEETHAKI 582
+K S+DK SK+ + +KG T+ N E AKI
Sbjct: 83 KKDKPSADKDRISKKDKKKSKKGKSKTKEESIEINAEEGAKI 124
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 316 QTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSS--VKLDVKPPEARKSLKS 474
Q ++S + K+ VG+R S R TA P TT+ S + DV+ P+ + K+
Sbjct: 315 QGQQSKYKGKEFVGNRFSQMRELYTAKPSPITTKVVSRPSQSDVREPQEQVPSKN 369
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +1
Query: 313 KQTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKLDVKPPEARKS 465
KQ ST P+ S SST + A T PK S L P RK+
Sbjct: 205 KQKSASTAPPRTRRNSSVSSTSASVAASTAPKAA--SPAVLPEGKPRRRKN 253
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 463 SLKSSDKLETSKQTTESRRKGTPXTEASRARENEETHAKIEIIMVLTRD 609
S DKL + K+T E P ++ + N+E + K+E + ++ D
Sbjct: 421 SASEFDKLNSEKKTFEILSTDIPAEDSMNSLLNDEENLKLEHVGDVSND 469
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 410 LPESPASNSTLNLQKPGSHSNPLTNSKLPNKRQSQGEKEHRP 535
+P+S A++ST+NL +P +++N ++ KR + P
Sbjct: 405 IPQSDANDSTVNLNQP-NYANLTPTPQVSPKRPTYSRSSPLP 445
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 591 YDFDFCMSFLIFSGTGRLCGRCSFSP*LCRLFGSFEFVRGFE*LPGFWRFNV 436
Y F+ C +FL + G L G + LC L +GFE L F+ + V
Sbjct: 507 YSFETCSAFLHYIYCGTLNGSYCTAKNLCNL---LILCKGFEGLETFFAYIV 555
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 10.0
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = -1
Query: 391 QWYRSECSTSESRQVALAFLW 329
QW+ + C + + +Q+A+ LW
Sbjct: 304 QWFTNRCVSPQFQQIAIPNLW 324
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/75 (24%), Positives = 29/75 (38%)
Frame = +1
Query: 289 EIDTKPAPKQTRKSTERPKQPVGSRKSSTRSDTTAPTQPKTTRKSSVKLDVKPPEARKSL 468
E+D S + RKSS + TT T+ + + +K + K
Sbjct: 33 EVDAVSKDGPEASSAGATDEDDSERKSSAKDLTTPVTEGEVDELKDMFSSMKKKKKSKKS 92
Query: 469 KSSDKLETSKQTTES 513
+S + +T TTES
Sbjct: 93 SASAEEQTEDITTES 107
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/69 (21%), Positives = 26/69 (37%)
Frame = +1
Query: 394 PTQPKTTRKSSVKLDVKPPEARKSLKSSDKLETSKQTTESRRKGTPXTEASRARENEETH 573
P Q K +L +PP+ + LKS T+ + E S +++
Sbjct: 216 PVQTKELESLFAELPTEPPKQTRFLKSQQPTSEPNVETQVEEQPALENEESEPEPSDDQF 275
Query: 574 AKIEIIMVL 600
+E + VL
Sbjct: 276 DLVEEVDVL 284
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 365 SRALGAIPLLRPNLKLPESPASNSTLNLQKPGSHSNPL 478
S+ GA+PL + +L SP ++ N + +S+PL
Sbjct: 36 SKEEGALPLYSDHARLSNSPNTHRENNPSRSTDNSSPL 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,573
Number of Sequences: 5004
Number of extensions: 53729
Number of successful extensions: 291
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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