Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0920
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    61   2e-10
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    29   0.46 
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    28   1.4  

>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 27/65 (41%), Positives = 41/65 (63%)
 Frame = +1

Query: 259 LEEKTLKEASWQLKGEVDASKRPQNSLLQEVVDFDLTTRPAPIITEQTTVSLEDIIKRRI 438
           LE + + + SW + GE  +  RP NSLL   ++F+   +P P+ TE+TT +LED+IK RI
Sbjct: 314 LEAENVAKKSWTMMGEATSKGRPSNSLLDVDLEFETGAKPVPVQTEETTETLEDLIKNRI 373

Query: 439 KDKAW 453
             K +
Sbjct: 374 ISKTF 378



 Score = 29.1 bits (62), Expect = 0.61
 Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 516 LDHSKSKLSLAQVYEAEYLKQKQAASGR-DCXRKRPXSH 629
           L+ +KS+ SLA+ YE E+LK+  A + + +  +K+   H
Sbjct: 400 LNENKSQRSLAEEYEEEFLKKSNADTYKSEADKKKEKEH 438


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 262 EEKTLKEASWQLKGEVDASKRPQNSLLQEVVDFDLTTRPAPIITEQTTVSLED 420
           +++  K A+W   GE+ +  +  N  + E+ +  L T+P  +I      S +D
Sbjct: 416 QQRYSKNANWDYIGEIASKVKSMNERIDELPEDSLRTQPLSLIGNGDCYSWQD 468


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 630 CGXWVFFFXNLSLMLPVSVLSTPPHRLEL 544
           C   +FF  NL+ +LPV+VL +P +  EL
Sbjct: 59  CINRIFFPNNLANLLPVAVLLSPENAFEL 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,689
Number of Sequences: 5004
Number of extensions: 26268
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)