BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0920 (675 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 72 5e-13 12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 71 9e-13 >11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752, 1710838-1710909,1711631-1711699,1711807-1711848, 1711946-1712014,1712130-1712267,1712390-1712500, 1712576-1712726,1713720-1713775,1714076-1714753 Length = 540 Score = 71.7 bits (168), Expect = 5e-13 Identities = 30/60 (50%), Positives = 47/60 (78%) Frame = +1 Query: 259 LEEKTLKEASWQLKGEVDASKRPQNSLLQEVVDFDLTTRPAPIITEQTTVSLEDIIKRRI 438 +E+ L+ ++W ++GEV+AS RP+NS L+ +DF+ RPAP+ITE+ T SLE++IK+RI Sbjct: 317 MEKANLEPSTWTMQGEVNASSRPKNSALEVDLDFEHNVRPAPVITEEVTASLEEMIKKRI 376 Score = 29.1 bits (62), Expect = 3.4 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%) Frame = +3 Query: 501 PKEEI-LDHSKSKLSLAQVYEAEYLKQ 578 PKE+ LD SKSK LA++YE +Y ++ Sbjct: 395 PKEQKDLDESKSKKGLAELYEDDYAQK 421 >12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267, 1658362-1658447,1658559-1658808,1659194-1660320, 1662207-1662351,1663555-1663696,1663775-1663828, 1663914-1663985,1664710-1664778,1664885-1664926, 1665024-1665092,1665257-1665394,1665518-1665628, 1665704-1665836,1666834-1666889,1667191-1667901 Length = 1198 Score = 70.9 bits (166), Expect = 9e-13 Identities = 30/60 (50%), Positives = 46/60 (76%) Frame = +1 Query: 259 LEEKTLKEASWQLKGEVDASKRPQNSLLQEVVDFDLTTRPAPIITEQTTVSLEDIIKRRI 438 +E+ L+ + W ++GEV+AS RP+NS L+ +DF+ RPAP+ITE+ T SLE++IK+RI Sbjct: 322 MEKANLEPSMWTMQGEVNASSRPKNSALEVDLDFEHNVRPAPVITEEVTASLEEMIKKRI 381 Score = 29.1 bits (62), Expect = 3.4 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%) Frame = +3 Query: 501 PKEEI-LDHSKSKLSLAQVYEAEYLKQ 578 PKE+ LD SKSK LA++YE +Y ++ Sbjct: 400 PKEQKDLDESKSKKGLAELYEDDYAQK 426 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,731,362 Number of Sequences: 37544 Number of extensions: 164104 Number of successful extensions: 352 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 341 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 352 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1714968940 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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