Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0920
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27034| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   7e-15
SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)                  40   0.002

>SB_27034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 629

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 36/65 (55%), Positives = 48/65 (73%)
 Frame = +1

Query: 259 LEEKTLKEASWQLKGEVDASKRPQNSLLQEVVDFDLTTRPAPIITEQTTVSLEDIIKRRI 438
           LE++ L +  WQ+ GE  +  RP NSLL+E ++FD T   AP ITE+TT +LEDIIK+RI
Sbjct: 320 LEKENLSKKPWQMSGETGSKARPINSLLEEDLNFDHTAVAAPPITEETTQNLEDIIKQRI 379

Query: 439 KDKAW 453
           KD+AW
Sbjct: 380 KDEAW 384



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 18/30 (60%), Positives = 21/30 (70%)
 Frame = +3

Query: 489 PTGIPKEEILDHSKSKLSLAQVYEAEYLKQ 578
           P    K+  LD  KSKLSL+Q+YE EYLKQ
Sbjct: 397 PYEYKKKMPLDQEKSKLSLSQIYEQEYLKQ 426


>SB_42202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +1

Query: 259 LEEKTLKEASWQLKGEVDASKRPQNSLLQEVVDFDLT 369
           LE++ L +  WQ+ GE  +  RP NSLL+E ++FD T
Sbjct: 476 LEKENLSKKPWQMSGETGSKARPINSLLEEDLNFDHT 512


>SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)
          Length = 345

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +1

Query: 259 LEEKTLKEASWQLKGEVDASKRPQNSLLQEVVDFDLT 369
           LE++ L +  WQ+ GE  +  RP NSLL+E ++FD T
Sbjct: 108 LEKENLSKKPWQMSGETGSKARPINSLLEEDLNFDHT 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,903
Number of Sequences: 59808
Number of extensions: 191107
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)