Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0920
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66540.1 68418.m08389 expressed protein ; supported by full-L...    70   2e-12

>At5g66540.1 68418.m08389 expressed protein ; supported by
           full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
          Length = 524

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/61 (49%), Positives = 43/61 (70%)
 Frame = +1

Query: 256 RLEEKTLKEASWQLKGEVDASKRPQNSLLQEVVDFDLTTRPAPIITEQTTVSLEDIIKRR 435
           ++E+  L    W ++GE+ A+KRP NS L+  +DF+   RPAP+ITE+ T SLED+IK R
Sbjct: 295 QMEKANLDPKHWTMQGEITAAKRPMNSALEVDLDFEHNARPAPVITEEVTASLEDLIKSR 354

Query: 436 I 438
           I
Sbjct: 355 I 355



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = +3

Query: 516 LDHSKSKLSLAQVYEAEYLKQKQAA 590
           LD SKSK  LA+VYEAEY ++   A
Sbjct: 380 LDESKSKKGLAEVYEAEYFQKANPA 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,653,414
Number of Sequences: 28952
Number of extensions: 139587
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)