Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0918
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YPA1 Cluster: Putative uncharacterized protein; n=1; ...    34   3.5  
UniRef50_Q88XV0 Cluster: ABC transporter, permease protein; n=21...    33   8.0  

>UniRef50_Q4YPA1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 68

 Score = 33.9 bits (74), Expect = 3.5
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 168 FLVMIFFLKLYMVLIFFL*IFKSVS*TI*PFICRYNL 58
           +L  +FF+ LY+   FFL I+K    +  P+IC+Y++
Sbjct: 9   YLKYLFFIYLYIFFYFFLVIYKFFIHSFFPYICQYDI 45


>UniRef50_Q88XV0 Cluster: ABC transporter, permease protein; n=21;
           Lactobacillales|Rep: ABC transporter, permease protein -
           Lactobacillus plantarum
          Length = 266

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 315 LSPRDKLVLRIVILGAIFVARNYSTKYAYFNFFLSDLNL 431
           + PR KL+L    +G IF+A N++T    F F L+ + L
Sbjct: 20  MDPRAKLLLSFYFIGIIFIANNWATYALLFAFTLAAIYL 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,048,609
Number of Sequences: 1657284
Number of extensions: 8160402
Number of successful extensions: 15479
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15477
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)