Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0918
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    30   0.015
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    29   0.034
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    29   0.034

>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 30.3 bits (65), Expect = 0.015
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 333 LVLRIVILGAIFVARNYSTKYAYFNFFLSDLNLEHYLIMLYVFFLLGKISCN 488
           LVL + +L  +F A  Y+TKY   N  L+ +     L+  YV  LL +  C+
Sbjct: 6   LVLFVAVLSVVFAADKYTTKYD--NIDLNQILKSDRLLKNYVNCLLDRGKCS 55


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 29.1 bits (62), Expect = 0.034
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 361 APKITILKTNLSRGERLFGLSDISLNTRHLSL*LKVVLFGI 239
           A +ITI    + R ++ FGL   S+N R +S+ + + + G+
Sbjct: 93  AKQITIFFDKIQRIDKQFGLLGYSINYRRISIFVNLAILGV 133


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 0.034
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 333 LVLRIVILGAIFVARNYSTKYAYFNFFLSDLNLEHYLIMLYVFFLLGKISCN 488
           LVL + ++  +F A  Y+TKY   N  L+ +     L+  YV  LL +  C+
Sbjct: 6   LVLFVAVVSVVFAADKYTTKYD--NIDLNQILKSDRLLKNYVNCLLDRGKCS 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,077
Number of Sequences: 336
Number of extensions: 2397
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)