Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0918
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    26   4.2  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   5.5  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   7.3  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +3

Query: 207  SSIRNIELLMLIPNKTTFNYKDKCRVLSEMSLKPNSLSPRDKLVLRIVILGAIFVARNYS 386
            S + N++ L    N T  N  +KC + S  SL+P    P ++L    ++   I    N S
Sbjct: 1009 SMLSNLKSLSFFGNVTEIN-TNKCMINSWTSLRPVLFGPSEQLPRNFLLRNDIVPNTNNS 1067

Query: 387  TKYAY 401
                Y
Sbjct: 1068 AWSEY 1072


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 11  PGRDLDYAGNIPHKTTKLYRQMKGYMV 91
           PG   D+ GN PH  T+ Y  +K   V
Sbjct: 390 PGSCNDFVGNNPHNFTEAYWNIKSLAV 416


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 386 YKVCVFQFFLVRFELRTLFDYVVRIFF 466
           ++VC   F+L+ F LR  F   + +FF
Sbjct: 480 FEVCCDIFYLMVFSLRAHFKQEIEVFF 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,538
Number of Sequences: 5004
Number of extensions: 38860
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)