Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0918
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082...    32   0.47 
06_03_0803 + 24737115-24737366,24738921-24739004,24739152-247392...    28   7.6  

>05_03_0496 +
           14706959-14707020,14707173-14707538,14708070-14708209,
           14708319-14708566,14708814-14708946,14709096-14709159,
           14709284-14709380,14709505-14709607,14709702-14709838,
           14710063-14710152,14710240-14710401
          Length = 533

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 348 VILGAIFVARNYSTKYAYFNFFLSDLNLEHYLIMLYVFFLLGKISCNRRMF 500
           ++LGAIFV       YA+F FF        +    + FF  G + C  R F
Sbjct: 70  LVLGAIFVLVGQWEGYAFF-FFFFFFFFFFFFFFFFFFFFSGDVYCGHRHF 119


>06_03_0803 +
           24737115-24737366,24738921-24739004,24739152-24739255,
           24739321-24739445,24739549-24739707,24740120-24740237,
           24740317-24740851,24740948-24741042,24741153-24741431,
           24741478-24741592,24741669-24741855,24741934-24742490
          Length = 869

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 234 MLIPNKTTFNYKDKCRVLSEMSLKPNSLSP 323
           M++P KT    +D  RV +  S  PNSL+P
Sbjct: 589 MILPAKTILGSRDAPRVAAFSSRGPNSLTP 618


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,629,762
Number of Sequences: 37544
Number of extensions: 193892
Number of successful extensions: 261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)