Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0918
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024759-6|AAP13761.1|  527|Caenorhabditis elegans Hypothetical ...    29   2.2  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    28   5.1  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    28   5.1  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    28   5.1  

>AC024759-6|AAP13761.1|  527|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.5 protein.
          Length = 527

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +3

Query: 264 YKDKCRVLSEMSLKPNSLSPRDKLVLRIVILGAIFVARNYSTKYAYFNFFLSDLNLEHYL 443
           YK    +L+ + L     SPR K++  + + G       +++    F+F L   NL+  +
Sbjct: 436 YKKSAELLARI-LATERFSPRQKIIDTVEMAGRFGQMPRWTSAGKEFSF-LKYFNLDLVI 493

Query: 444 IMLYVFFL 467
           I +++FFL
Sbjct: 494 IAVFIFFL 501


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
            protein 104, isoforma protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 306  PNSLSPRDKLVLRIVILGAIFVARNYSTKYAYFNF 410
            P  +    +   R+V+L AI VA  YS  +  FNF
Sbjct: 909  PEHMQEEVEFCFRVVVLQAIDVADTYSDVFCQFNF 943


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
            protein 104, isoformb protein.
          Length = 1628

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 306  PNSLSPRDKLVLRIVILGAIFVARNYSTKYAYFNF 410
            P  +    +   R+V+L AI VA  YS  +  FNF
Sbjct: 956  PEHMQEEVEFCFRVVVLQAIDVADTYSDVFCQFNF 990


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
            protein protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 306  PNSLSPRDKLVLRIVILGAIFVARNYSTKYAYFNF 410
            P  +    +   R+V+L AI VA  YS  +  FNF
Sbjct: 909  PEHMQEEVEFCFRVVVLQAIDVADTYSDVFCQFNF 943


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,704
Number of Sequences: 27780
Number of extensions: 206412
Number of successful extensions: 394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)