Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0917
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    25   0.75 
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    24   1.3  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    24   1.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.2  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 393 RFNYYQIQMYYYTIVPITSTILLVLYT 313
           R ++Y+I  Y Y IV ++ T  +V  T
Sbjct: 36  RHSFYKIYKYTYNIVAVSLTAYMVYIT 62


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 334 STGNWYYGVIVHLNLIIIKTFKMYLSIIYYIICMNL 441
           ST +WY G  +   ++  + F +YLS  + ++C+++
Sbjct: 115 STVSWYAGDAMCRIMMFFRMFGLYLS-SFILVCISV 149


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +1

Query: 334 STGNWYYGVIVHLNLIIIKTFKMYLSIIYYIICMNL 441
           ST +WY G  +   ++  + F +YLS  + ++C+++
Sbjct: 115 STVSWYAGDAMCRIMMFFRMFGLYLS-SFILVCISV 149


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 331 ITSTVHTNIYKPDSHCIMYLLKYVCKN 251
           ++ T  TN+ K + +    L KY+CKN
Sbjct: 312 LSKTKETNLEKSNLNHNEQLRKYLCKN 338


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 331 ITSTVHTNIYKPDSHCIMYLLKYVCKN 251
           ++ T  TN+ K + +    L KY+CKN
Sbjct: 204 LSKTKETNLEKSNLNHNEQLRKYLCKN 230


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 672 LVAVHLPSIXQEFKLLGXFVFCIL 601
           LVA  LP +     LLG +  CI+
Sbjct: 259 LVAETLPQVSDAIPLLGTYFNCIM 282


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 672 LVAVHLPSIXQEFKLLGXFVFCIL 601
           LVA  LP +     LLG +  CI+
Sbjct: 259 LVAETLPQVSDAIPLLGTYFNCIM 282


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 672 LVAVHLPSIXQEFKLLGXFVFCIL 601
           LVA  LP +     LLG +  CI+
Sbjct: 259 LVAETLPQVSDAIPLLGTYFNCIM 282


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 264 TFVKT*WQFLNHF 226
           TF++T W+F N F
Sbjct: 406 TFMRTVWKFFNIF 418


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,831
Number of Sequences: 336
Number of extensions: 3510
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)