Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0917
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    29   0.61 
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   5.7  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    25   7.6  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    25   7.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   10.0 
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   10.0 
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        25   10.0 

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 495  FLPNLXLFDGSWIGRRTAYVVGSLALKNPIFKLTIIRYKIQN 620
            FL  L L  G W   R A +V +   K+ ++  T+  Y+I N
Sbjct: 1050 FLSKLVLVHGRWDYNRVAEMVNNFFYKSVVWTFTLFWYQIYN 1091


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 94  ILCSLLHQPDFQEIWIRSG 38
           +LCS++H PD Q+I +  G
Sbjct: 69  MLCSIIHDPDCQDILLDIG 87


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 227 LPADITRQQRKAVFGAST*VLNC 159
           L  D+TR   + +FGA   +LNC
Sbjct: 453 LKGDVTRHGTRTIFGAFKDLLNC 475


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 96  LFYVVCYINQIFRKSGFGVVFYTA 25
           ++ V  Y+ +IF+K GFG +  TA
Sbjct: 133 VYRVAYYMGKIFKKQGFGNLIATA 156


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 388  KTFKMYLSIIYYIICMNLMSKMFLYDI 468
            KT++    II+ +IC    S +F YDI
Sbjct: 1571 KTYEESKLIIWKLICQKACSLLFKYDI 1597


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = -3

Query: 120  IHMGTHR*LFYVVCYINQIFRKSGFGVVFYT 28
            IH   H+  F+++C++++ FR  G  + +++
Sbjct: 1559 IHRFAHK--FFIICFLSREFRHDGANLAWWS 1587


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 342 TSTILLVLYTPTYTNQILIAS 280
           T T+L+V   P YTN++L  S
Sbjct: 42  TVTVLIVPVLPVYTNKVLCCS 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,515
Number of Sequences: 5004
Number of extensions: 53436
Number of successful extensions: 120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)