Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0917
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0423 - 3092863-3094959                                           31   0.64 
02_01_0413 - 3028946-3031111                                           31   0.64 
02_01_0412 - 3005600-3007759                                           31   0.64 
02_01_0411 - 2998806-3000938                                           31   1.1  
02_03_0406 + 18663986-18664059,18665082-18665405,18665499-186655...    30   1.5  
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305...    29   4.5  
02_01_0406 - 2958933-2962076                                           29   4.5  
02_01_0404 - 2945611-2948802                                           29   4.5  
07_01_0215 - 1607473-1609494                                           28   7.8  

>02_01_0423 - 3092863-3094959
          Length = 698

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -1

Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
           VLN SS LFT +  F  +TWE + N  + + ++ RF+G + + +
Sbjct: 144 VLNISSNLFTGN--FPSTTWERMNNLVVLNASNNRFTGQMPTSF 185


>02_01_0413 - 3028946-3031111
          Length = 721

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -1

Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
           VLN SS LFT +  F  +TWE + N    + ++  FSG++ S +
Sbjct: 159 VLNISSNLFTGA--FPSTTWEKMSNLVAINASNNSFSGHIPSSF 200


>02_01_0412 - 3005600-3007759
          Length = 719

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -1

Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDS 45
           VLN SS LFT +  F  +TWE + N F  + ++  F+G + S
Sbjct: 158 VLNISSNLFTGA--FPSTTWEKMSNLFAINASNNSFTGYIPS 197


>02_01_0411 - 2998806-3000938
          Length = 710

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -1

Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
           VLN SS  FT +  F  STWE + N    +V++  F+G++ S +
Sbjct: 148 VLNISSNQFTGA--FPSSTWEKMSNLVAINVSNNSFTGHIPSSF 189


>02_03_0406 +
           18663986-18664059,18665082-18665405,18665499-18665559,
           18666136-18666282,18666368-18666492,18666619-18666648,
           18666689-18666893,18667532-18667741,18667886-18667888,
           18670034-18670942,18671239-18672069
          Length = 972

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
           VLN SS LFT +  F  +TWE + N    + ++  F+G++ S +
Sbjct: 513 VLNISSNLFTGA--FPSTTWEKMSNLVAINASNNSFTGHIPSSF 554


>02_01_0417 -
           3048519-3048710,3048903-3050600,3050622-3050909,
           3052308-3052377,3052417-3052668,3053235-3055297
          Length = 1520

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -1

Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDS 45
           VLN SS LFT +  F  +TWE   + F  + ++  F+G + S
Sbjct: 157 VLNISSNLFTGA--FPSTTWEKTSSLFAINASNNSFTGYIPS 196


>02_01_0406 - 2958933-2962076
          Length = 1047

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
           VLN SS LFT    F  S W+ + N    +V+S +F+G + + +
Sbjct: 156 VLNISSNLFTGQ--FPSSIWDVMKNLVALNVSSNKFTGKIPTRF 197


>02_01_0404 - 2945611-2948802
          Length = 1063

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 170 VLNCSSFLFTRSPTFSLSTWEPIGNYFM*SVTSTRFSGNLDSEW 39
           VLN SS  FT    F  +TWE + N  M + ++  F+G++ S +
Sbjct: 165 VLNISSNSFTGQ--FPSATWEMMKNLVMLNASNNSFTGHIPSNF 206


>07_01_0215 - 1607473-1609494
          Length = 673

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 194 LSSADA*YRPAK*FKNCHYVFTNVFK*IHDAMRIWFVYVG 313
           + S DA Y  A  +++   +F N+   IH+AM++WF Y G
Sbjct: 161 MKSLDAHY--AGFYEDRSGIFRNLTLVIHEAMQVWFDYDG 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,479,517
Number of Sequences: 37544
Number of extensions: 287822
Number of successful extensions: 523
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)