Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0917
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    28   5.3  

>Z80220-3|CAB02306.1|  601|Caenorhabditis elegans Hypothetical
           protein T08G11.3 protein.
          Length = 601

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 350 YQLPVLXXXYCTHQHIQTRFSLHHVF 273
           +Q P      C HQH ++RFS  H++
Sbjct: 17  FQEPSTRRALCFHQHCRSRFSFLHIY 42


>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 366 YYYTIVPITSTILLVLYTPTYTNQILIASCIYLNTFV 256
           ++Y++ P+   +  + Y   Y N+ + + CI+ N FV
Sbjct: 211 FFYSMYPMVDPLPTIYYVDEYRNEFM-SECIFNNEFV 246


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,526,054
Number of Sequences: 27780
Number of extensions: 289710
Number of successful extensions: 587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)