Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0917
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.1  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   8.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   8.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.1  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 672 LVAVHLPSIXQEFKLLGXFVFCIL 601
           LVA  LP +     LLG +  CI+
Sbjct: 242 LVAETLPQVSDAIPLLGSYFNCIM 265


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 672 LVAVHLPSIXQEFKLLGXFVFCIL 601
           LVA  LP +     LLG +  CI+
Sbjct: 242 LVAETLPQVSDAIPLLGSYFNCIM 265


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 672 LVAVHLPSIXQEFKLLGXFVFCIL 601
           LVA  LP +     LLG +  CI+
Sbjct: 242 LVAETLPQVSDAIPLLGSYFNCIM 265


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 672 LVAVHLPSIXQEFKLLGXFVFCIL 601
           LVA  LP +     LLG +  CI+
Sbjct: 310 LVAETLPQVSDAIPLLGSYFNCIM 333


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 106 PSVTILCSLLHQPDFQEIWIRSGF 35
           P+V++ CS    P  Q  W   GF
Sbjct: 437 PAVSLKCSAAGNPTPQVTWALDGF 460


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 106 PSVTILCSLLHQPDFQEIWIRSGF 35
           P+V++ CS    P  Q  W   GF
Sbjct: 437 PAVSLKCSAAGNPTPQVTWALDGF 460


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 40  HSESRFPENLVDVTDYIK 93
           +SE+RF E   +V+ YIK
Sbjct: 162 YSEARFEEIKKEVSSYIK 179


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 40  HSESRFPENLVDVTDYIK 93
           +SE+RF E   +V+ YIK
Sbjct: 89  YSETRFEEIKKEVSSYIK 106


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 40  HSESRFPENLVDVTDYIK 93
           +SE+RF E   +V+ YIK
Sbjct: 105 YSETRFEEIKKEVSSYIK 122


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 40  HSESRFPENLVDVTDYIK 93
           +SE+RF E   +V+ YIK
Sbjct: 162 YSETRFEEIKKEVSSYIK 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,878
Number of Sequences: 438
Number of extensions: 3421
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)