Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0917
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53860.1 68414.m06130 remorin family protein contains Pfam do...    28   5.0  
At5g15120.1 68418.m01771 expressed protein                             28   6.6  
At1g36095.1 68414.m04487 hypothetical protein contains Pfam doma...    28   6.6  

>At1g53860.1 68414.m06130 remorin family protein contains Pfam
           domain, PF03763: Remorin, C-terminal region
          Length = 442

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +1

Query: 64  NLVDVTDYIK*LPMGSHVDKLNVGDLVNRKLLQFNT 171
           NL + TD+IK LP+ S+    +  ++VN +   F++
Sbjct: 44  NLKETTDFIKSLPISSNQSSSSSNEMVNERRPSFSS 79


>At5g15120.1 68418.m01771 expressed protein
          Length = 293

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 164 LILTWMRQKLLSSADA*YRPAK*FKNCHYVFTN 262
           +++TW R+K+ S AD      + F  C  VF+N
Sbjct: 39  MMMTWRRKKIDSPADGITAVRRLFNTCKEVFSN 71


>At1g36095.1 68414.m04487 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 301

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 168 YLRGCAKNCFPLLTRNIGRQNDLKTAIT 251
           Y   CA +C  L+  +IG+ +++KT IT
Sbjct: 184 YWTPCAAHCIYLMLEDIGKISEVKTVIT 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,259,371
Number of Sequences: 28952
Number of extensions: 256446
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)