Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0916
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    34   0.016
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   1.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   1.9  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.9  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   4.3  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   10.0 
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    25   10.0 

>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 386 YPSGFDPATILATHLSPFSCFSDRGSVVTTGGDTSKCKLDFSSLK 252
           YP G +     A  L P+  F + G  V    +T KCK D  S+K
Sbjct: 19  YPDGMNTGVHFAELLIPYQVFREAGYEVQLTSETGKCKFDDHSIK 63


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/73 (24%), Positives = 27/73 (36%)
 Frame = +1

Query: 382 GYDSGHESTPRTGKHSPAATSRRAESGYDSVPXXXXXXXXXXXXXXEPQSHGRTLKNTPQ 561
           G+   HE      +HSP     R  + Y + P              +P S    ++N P+
Sbjct: 195 GFGMRHEHNSELRRHSPG---NRRFNPYKAYPQPHLGHRFSRNAGNDPTSTALEVRNIPE 251

Query: 562 RNTNSTTDRSFCS 600
            + N    RSF S
Sbjct: 252 EHFNEENIRSFFS 264


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 268  SNLHLEVSPPVVTTEPRSEKHEKG 339
            SN  LE +   VT  P SEKHE G
Sbjct: 1177 SNFSLEETNASVTDMPESEKHENG 1200


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 364 AGSKPDGYDSGHESTPRTGKHSPAATSRRAESG 462
           + S      + H+S P T   SP++TS  + SG
Sbjct: 56  SSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSG 88


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 371 RNRTDTIAGMNQLREPENTVRPPPRDEPN 457
           + +T T A  + +R+ E+T+   PR EP+
Sbjct: 652 QTKTVTSANSSNIRDMEHTISDKPRSEPD 680


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 415 FSELIHARYRIRPVSIRQLFWLRIYRPFHVSRIEVRLSQ 299
           FS L+HA  R +   +  + ++R Y  +  SRI   L+Q
Sbjct: 564 FSSLLHANARTKKKELLNINFVRKYIQYAKSRIHPILNQ 602


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = -3

Query: 260 SLKYTPRFR-VFVFLLA---S*GRMHHLGVLEMRFLHQLCRC 147
           ++ YTP F+    +L A   S GR++ +G  ++  L  LCRC
Sbjct: 313 NVHYTPNFKGALAYLEAYQNSIGRIYVIGDKKLLTLGMLCRC 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,007,068
Number of Sequences: 5004
Number of extensions: 65962
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)