Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0916
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0012 + 166514-167194 31 0.64
03_06_0394 + 33592780-33593310,33593890-33594013,33594233-335943... 31 1.1
01_01_0324 - 2613396-2613452,2613658-2613750,2614045-2614236,261... 31 1.1
10_08_0765 - 20421813-20423174,20423591-20423771,20423862-204241... 30 1.5
04_03_0653 - 18429736-18431379 30 1.5
06_01_0782 - 5848381-5849394,5851143-5851255,5851337-5851440,585... 29 2.6
12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107... 29 3.4
12_02_1195 + 26906814-26907121,26907771-26907992,26908913-269091... 29 4.5
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557... 29 4.5
09_04_0720 - 19720844-19720975,19721582-19721809,19722108-197222... 28 7.8
08_02_1349 - 26309330-26309881,26309902-26310534 28 7.8
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 28 7.8
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 28 7.8
02_05_1217 + 34999631-34999945,35000670-35000835,35001908-350020... 28 7.8
>06_01_0012 + 166514-167194
Length = 226
Score = 31.5 bits (68), Expect = 0.64
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 65 PGSAVGGAYHEPDGSHNDCYGPFERYRGNDITDARIASLRHPDGASDPNLREEK 226
PG G + D S DC P ++ + IT A++A L H GA+ + R ++
Sbjct: 73 PGRQWKGPWRWFDESMLDCCEPLDKVKAEGITFAKLACLAHCAGANVRSFRADQ 126
>03_06_0394 +
33592780-33593310,33593890-33594013,33594233-33594376,
33594463-33594615,33594973-33595088,33595253-33595420,
33595514-33595744,33596229-33596378
Length = 538
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Frame = +2
Query: 410 REPENTVRPPPRD------EPNPATTLFQETQTRHPWTH 508
REP V P +D +PNP T L E HPW H
Sbjct: 285 REPWPRVSEPAKDLVKRMLDPNPMTRLTAEQVLEHPWLH 323
>01_01_0324 -
2613396-2613452,2613658-2613750,2614045-2614236,
2614325-2614398,2615846-2616098,2616179-2616249,
2616878-2617042,2617440-2617469,2617867-2617947,
2618047-2618272
Length = 413
Score = 30.7 bits (66), Expect = 1.1
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = -3
Query: 305 VTTGGDTS-KCKLDFS---SLKYTPRFRVFVFLLAS*GRMHHLG-VLEMRFLHQLCRCLC 141
V + DTS CKLDF +L +T + VF + + H G +L ++ + CL
Sbjct: 326 VISSYDTSFSCKLDFEDQFTLSHTSQEEDVVFYGYT---LRHAGTILLFVYIDIITLCLL 382
Query: 140 TFRMARSSRCEIHLVRDKPHLQHSL 66
F M R I +++ L+HSL
Sbjct: 383 NFYMMMELRLNIEMIQSIVRLRHSL 407
>10_08_0765 - 20421813-20423174,20423591-20423771,20423862-20424117,
20424768-20425095,20425218-20426156,20427015-20427761,
20428517-20428789
Length = 1361
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 229 NTRKRGVYFKELKS-NLHLEVSPPVVTTEPRSEKHEKGDKCVARIVAGSKPDGYDSGHES 405
++++RG +F L NL + E R+++ ++ R +GS + S
Sbjct: 873 DSKRRGCFFNALDDKNLAEIIMHATKEGEQRNQREQRSAHNANRWSSGSSRHDIIAAGNS 932
Query: 406 TPRTGKHSPAATSRRAESGYDS 471
P H P + + R +G+DS
Sbjct: 933 RPMRWSHFPGSGNTRRSNGHDS 954
>04_03_0653 - 18429736-18431379
Length = 547
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 547 LACARATAARLVGMSPRMTRLSLLEQSRSRIRLVSRWR 434
+AC A G +PR+ RLSL R+ LV WR
Sbjct: 303 VACVDGPVALAFGGAPRLARLSLTYALDDRLVLVRNWR 340
>06_01_0782 -
5848381-5849394,5851143-5851255,5851337-5851440,
5851584-5851660,5851740-5852132,5852267-5852482,
5852826-5852923,5853503-5853637,5853745-5853811,
5853999-5854094,5854555-5854683
Length = 813
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = -3
Query: 527 CGSSSRDESKDDASESLGTES*PDS-ARLEVAAGLCFPVLGVDSCPLSYPSGFDPATILA 351
C DE + S T++ DS A L+ A FP D PS DP + +A
Sbjct: 445 CLRMPTDEHRVKVGISWFTKTAVDSLASLQNAVANSFP--SPDPATNRSPSAMDPDSEVA 502
Query: 350 THLSPFSCFSDRGSVVTTGGD 288
P+ C G V GGD
Sbjct: 503 FDFQPYLCQYKSGRVFRLGGD 523
>12_02_0384 +
18409831-18409843,18410378-18410471,18410614-18410734,
18411635-18412543,18412772-18413211,18413481-18414516
Length = 870
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 541 CARATAARLVGMSPRMTRLSLLEQSRSRIRLVSRWRPDCVFRFSELI 401
C R + + + P +T LSL+ R +S+W PDC+ S L+
Sbjct: 744 CPRISWENGLALPPTLTSLSLV-----RCGDISKWIPDCLLNLSSLV 785
>12_02_1195 +
26906814-26907121,26907771-26907992,26908913-26909153,
26909512-26909642,26910336-26910474,26910600-26910810,
26911371-26911759
Length = 546
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -1
Query: 574 CLYFAVVCFLACARAT---AARLVGMSPRMTRLS 482
C + ++ CF CA+++ RLVG P+ TRLS
Sbjct: 323 CAFLSLFCFKVCAKSSKRYLVRLVG-KPKQTRLS 355
>06_03_0175 +
17553447-17553667,17555313-17555467,17555625-17555713,
17556253-17556376,17556920-17556989,17557345-17557441,
17559365-17559427,17559504-17559581,17559675-17559737
Length = 319
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 383 DTIAGMNQLREPENTVRPPPRDEPNPATTLFQETQTRHPWTHP 511
D +G + L P N + P +++ N ++ +E + HP+ +P
Sbjct: 129 DLCSGSSDLYYPSNDMDPYLKNKNNGLVSILEEMEDGHPYLYP 171
>09_04_0720 -
19720844-19720975,19721582-19721809,19722108-19722290,
19722361-19722476,19722684-19722836,19722977-19723120,
19723257-19723380,19723548-19724479,19725245-19725422
Length = 729
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = +2
Query: 395 GMNQLREPENTVRPPPRD------EPNPATTLFQETQTRHPW 502
G+N REP V P +D +P+P+T L + HPW
Sbjct: 473 GINFQREPWPKVSPHAKDLVSKMLDPDPSTRLTAKEVLEHPW 514
>08_02_1349 - 26309330-26309881,26309902-26310534
Length = 394
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 167 RIASLRHPDGASDPNLREEKRIPG 238
R+ASLRH G SDP + +PG
Sbjct: 131 RVASLRHRVGLSDPQIASLLLLPG 154
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 27.9 bits (59), Expect = 7.8
Identities = 26/78 (33%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = -3
Query: 548 FSVRPCDCGSSSRDESKDDASESLGTES*PDSARLEVAAGLCF------PVLGVDSCPLS 387
F R S RDE+KD +ES +ES A L ++ G+ V+ LS
Sbjct: 212 FLTRSQSALESRRDENKDPTTESTTSES-LSEACLNMSLGIASNGNKLEATSTVERPMLS 270
Query: 386 YPSGFDPATILATHLSPF 333
+GF L T LSPF
Sbjct: 271 PTTGFPEGRELTTALSPF 288
>03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +2
Query: 434 PPPRDEPNPATTLFQETQTRHPWTHP 511
PPP D PN L + PW P
Sbjct: 1047 PPPTDSPNSVDELIGRDMSMSPWNGP 1072
>02_05_1217 + 34999631-34999945,35000670-35000835,35001908-35002005,
35002245-35002319,35002413-35002481,35002552-35002637,
35002710-35002827,35003575-35003902,35003995-35005682,
35005822-35005881,35005953-35006027,35006105-35006197,
35006298-35006372,35006464-35006532,35006614-35006682,
35006994-35007113
Length = 1167
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -1
Query: 625 LHVNDSLATSRMNDRLCCLYFAVVCF--LACARATAARLVGMSPRMTRLSLLEQSRSRIR 452
LH A +N CL V F L C RA A++L ++ +S+ S+ IR
Sbjct: 1073 LHATKDAALKVVNQAHICLTTVVTQFDPLTCLRAIASQLANQDEKVLIVSINSLSKLVIR 1132
Query: 451 L 449
L
Sbjct: 1133 L 1133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,852,097
Number of Sequences: 37544
Number of extensions: 493368
Number of successful extensions: 1797
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1787
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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