Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0916
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_31294| Best HMM Match : 7tm_1 (HMM E-Value=7.2)                     31   1.1  
SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)               30   1.5  
SB_29860| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_48427| Best HMM Match : Dynactin_p22 (HMM E-Value=2.7)              29   2.6  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_25604| Best HMM Match : DUF1634 (HMM E-Value=0.24)                  29   4.5  
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_2059| Best HMM Match : PAN (HMM E-Value=0.024)                      28   6.0  
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)          28   7.9  
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              28   7.9  

>SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = +1

Query: 277 HLEVSPPVVTTEPRSEKHEKGDKCVARIVAGSKPDGYDSGHESTPRTGKHSPAATSRRAE 456
           H  +SPP +   PRSE H K     AR  A S        HES  ++   +      R  
Sbjct: 600 HPSLSPPDLKDAPRSEAHSKRRPSSARARANSTDSDDSVFHESANQSETGADTRPRTRTL 659

Query: 457 SG 462
           SG
Sbjct: 660 SG 661


>SB_31294| Best HMM Match : 7tm_1 (HMM E-Value=7.2)
          Length = 231

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 571 LYFAVVCFLACARATAARLVGMSPRMTRLSLLEQSRSRI 455
           LY A++C + C R T   L   + ++ R+S  +QSR R+
Sbjct: 50  LYLAIICRVRCNRVTL--LAASATKINRISKTKQSRERL 86


>SB_26666| Best HMM Match : Pkinase (HMM E-Value=3.7e-38)
          Length = 1215

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +1

Query: 307 TEPRSEKHEKGDKCVARIVAGSKPDGYDSGHESTPRTGKHSPAAT------SRRAESGYD 468
           TE  SE  +     + ++   S+  G+  G E TPR G H  A T      SRRA  G  
Sbjct: 576 TEASSEIPDDLQMKLLQLPLKSRRSGFSPGRERTPREGNHITAHTGIRYNSSRRASDGAA 635

Query: 469 SV 474
           S+
Sbjct: 636 SI 637


>SB_29860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 220 RKTNTRKRGVYFKELKSNLHLEVSPPVVTTEPRSEKHE 333
           ++ N R+RG YF+ L + LH +V     + + RS+KHE
Sbjct: 34  QEENKRERGGYFETLVTRLHTQVD----SQQNRSKKHE 67


>SB_48427| Best HMM Match : Dynactin_p22 (HMM E-Value=2.7)
          Length = 294

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 411 ENRKTQSGRHLETSRIRLRLCSKRLRRVILGLIP 512
           +NRK Q G+HLE  R R + C++ L+     +IP
Sbjct: 50  DNRKNQLGKHLEHLR-RFQECNEELQTWFTAIIP 82


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 411 ENRKTQSGRHLETSRIRLRLCSKRLRRVILGLIP 512
           +NRK Q G+HLE  R R + C++ L+     +IP
Sbjct: 490 DNRKNQLGKHLEHLR-RFQECNEELQTWFTAIIP 522


>SB_25604| Best HMM Match : DUF1634 (HMM E-Value=0.24)
          Length = 333

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 649 FLDRCQAYLHVNDSLATSRMNDR--LCCLYFAVVCFLAC 539
           F  RC AYL V+D  AT    +R  L  ++  ++C L C
Sbjct: 236 FCHRCVAYLCVSDEKATKFGKNRAWLLLVFIYILCSLGC 274


>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +1

Query: 292 PPVVTTEPRSEKHEKGDKCVARIVA-GSKPDGY--DSGHESTPRTGKHSPAATSRRAESG 462
           PP +T     +   +G + +    A GS P+     +G      TGKH+ AA SRR E  
Sbjct: 318 PPAITGFSPPQNVAEGSEVMLECNATGSSPNITIERNGEAQLSTTGKHTFAAISRREEGS 377

Query: 463 Y 465
           Y
Sbjct: 378 Y 378


>SB_20283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 455 SARLEVAAGLCFPVLGVDSCPLSYPSGFDPATILATHLSPFSCFSDRGSVVTTG 294
           S++   A GL FP     S   S PSGF   T    +++P S      S+ T+G
Sbjct: 490 SSQPVAAGGLSFPTAATTSSAPSGPSGF---TFGGNNVTPTSALPSNTSLATSG 540


>SB_2059| Best HMM Match : PAN (HMM E-Value=0.024)
          Length = 297

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 14  YRPSDKICDSCKRTM-SRPGSAVGGAYHEPDGSHND 118
           Y PS ++C+ C  T  SRPG  V    H+P   H D
Sbjct: 35  YHPSTRMCELCNHTFTSRPGCKV----HKPGYIHFD 66


>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
          Length = 646

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 556 PQRNTNSTTDRSFCSWLRNRSRANTLDTDPEI 651
           P R TN     S+C       RA+TL T P +
Sbjct: 94  PNRKTNRAASGSWCGARTYNKRASTLSTQPRL 125


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = +2

Query: 416 PENTVRPPPRDEPNPATTLFQETQTRHPWTHPD*TSRSRTGAR*KTHHSEIQTAQPIVHS 595
           P  T+ PPP   P P TT  Q T T  P T    ++ S T  R  T      T+ P   +
Sbjct: 181 PPPTLPPPPTTTPPPTTT--QATTTNPPTTT---STASSTTVRATTSGEVSSTSSPGADT 235

Query: 596 ARG 604
           + G
Sbjct: 236 STG 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,732,896
Number of Sequences: 59808
Number of extensions: 551888
Number of successful extensions: 1881
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)