Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0916
(676 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 30 1.7
Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical pr... 29 2.3
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 29 3.0
U97592-1|AAB52871.3| 638|Caenorhabditis elegans Temporarily ass... 29 4.0
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 28 5.3
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 28 5.3
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 28 5.3
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 28 5.3
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 28 5.3
AF026204-4|AAB71250.1| 319|Caenorhabditis elegans Hypothetical ... 28 5.3
U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w... 27 9.2
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Frame = +2
Query: 365 PDRNRTDTIAGMNQLREPENTVRPPPRDEPNPATTLFQETQTRH------PWTHPD*TSR 526
P R + G+ P PPP + P T TQT PWT P T+R
Sbjct: 351 PTDGRVHVMPGIRVTETPPTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAPWTPPTTTTR 410
>Z92834-3|CAB07384.1| 328|Caenorhabditis elegans Hypothetical
protein F39B2.3 protein.
Length = 328
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 211 VRVGCTIWVS*RCDSCISYVVASVPFEWPVAV 116
V+VG +W DS YV + PFE P V
Sbjct: 88 VKVGDRVWYGSEADSTAEYVAVNRPFELPEGV 119
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 29.1 bits (62), Expect = 3.0
Identities = 37/159 (23%), Positives = 58/159 (36%), Gaps = 13/159 (8%)
Frame = +1
Query: 229 NTRKRGVYFKELKSNLHLEVSPPVVTTEPRSEKHEKGDKCVARIVAGSKPDGYDSGHEST 408
N+ K G+ ++L N LE S P E E+H K + ++ D HE
Sbjct: 344 NSEKPGI-LEDLAENPDLEASNPEFDAE-NDEEHAKIVQSTENAQNLTENDEKSENHEHL 401
Query: 409 P-RTGKHSPAATSRRAESG-----------YDSVPXXXXXXXXXXXXXXEPQSHGRTLKN 552
P + G S A + E+ + + EP++ +N
Sbjct: 402 PEKPGNRSDLAENSDLEASKPEFYAENDEKHAELVQSTKNAQNLAENGEEPENPEALAEN 461
Query: 553 TPQRNTNSTTDRSFCSWLRNRS-RANTLDTDPEISDFLI 666
+ N + S +L N A L +PEISDFL+
Sbjct: 462 ADENPENLESQASQADFLSNTDGNAQNLVENPEISDFLV 500
>U97592-1|AAB52871.3| 638|Caenorhabditis elegans Temporarily
assigned gene nameprotein 150, isoform b protein.
Length = 638
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +1
Query: 211 LARRKTNTRKRGVYFKELKSNLHLEVSPP--VVTTEPRSEKHEKGDKCVARIVAGSKPDG 384
+ R + R+ + ++ + LHL+ PP VVT E +S+K+ ++ ++ V
Sbjct: 168 IEERIGDIRRMSLAKRDQLTKLHLQKPPPVQVVTPEKKSKKNSSKNELDSKDVPSC---- 223
Query: 385 YDSGHESTPRTGKHSPAATSRRAESGYDSV 474
SG ESTP G SP +R + +D +
Sbjct: 224 --SG-ESTP-AGTLSPRRETREVTNAFDEM 249
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 342 IALFMFLGSRFGCHNWRGHLQMQIRF*FFKVHAPFPGIRFSSRKLGSDAPSGCLRDAILA 163
+A FM G+ W G + Q+R F + +A P I F G +D I A
Sbjct: 456 VAFFMRKGADC-LSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHA 514
Query: 162 SVMSLPLYLSNG 127
S++S L L +G
Sbjct: 515 SIVSTLLALMDG 526
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 342 IALFMFLGSRFGCHNWRGHLQMQIRF*FFKVHAPFPGIRFSSRKLGSDAPSGCLRDAILA 163
+A FM G+ W G + Q+R F + +A P I F G +D I A
Sbjct: 454 VAFFMRKGADC-LSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHA 512
Query: 162 SVMSLPLYLSNG 127
S++S L L +G
Sbjct: 513 SIVSTLLALMDG 524
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 342 IALFMFLGSRFGCHNWRGHLQMQIRF*FFKVHAPFPGIRFSSRKLGSDAPSGCLRDAILA 163
+A FM G+ W G + Q+R F + +A P I F G +D I A
Sbjct: 456 VAFFMRKGADC-LSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHA 514
Query: 162 SVMSLPLYLSNG 127
S++S L L +G
Sbjct: 515 SIVSTLLALMDG 526
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 342 IALFMFLGSRFGCHNWRGHLQMQIRF*FFKVHAPFPGIRFSSRKLGSDAPSGCLRDAILA 163
+A FM G+ W G + Q+R F + +A P I F G +D I A
Sbjct: 456 VAFFMRKGADC-LSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHA 514
Query: 162 SVMSLPLYLSNG 127
S++S L L +G
Sbjct: 515 SIVSTLLALMDG 526
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 342 IALFMFLGSRFGCHNWRGHLQMQIRF*FFKVHAPFPGIRFSSRKLGSDAPSGCLRDAILA 163
+A FM G+ W G + Q+R F + +A P I F G +D I A
Sbjct: 454 VAFFMRKGADC-LSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHA 512
Query: 162 SVMSLPLYLSNG 127
S++S L L +G
Sbjct: 513 SIVSTLLALMDG 524
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical
protein F11A10.1a protein.
Length = 1291
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 342 IALFMFLGSRFGCHNWRGHLQMQIRF*FFKVHAPFPGIRFSSRKLGSDAPSGCLRDAILA 163
+A FM G+ W G + Q+R F + +A P I F G +D I A
Sbjct: 456 VAFFMRKGADC-LSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHA 514
Query: 162 SVMSLPLYLSNG 127
S++S L L +G
Sbjct: 515 SIVSTLLALMDG 526
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48
expression abnormal protein protein.
Length = 1291
Score = 28.3 bits (60), Expect = 5.3
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 342 IALFMFLGSRFGCHNWRGHLQMQIRF*FFKVHAPFPGIRFSSRKLGSDAPSGCLRDAILA 163
+A FM G+ W G + Q+R F + +A P I F G +D I A
Sbjct: 456 VAFFMRKGADC-LSKWVGESERQLRLLFDQAYAMRPSIIFFDEIDGLAPVRSSKQDQIHA 514
Query: 162 SVMSLPLYLSNG 127
S++S L L +G
Sbjct: 515 SIVSTLLALMDG 526
>AF026204-4|AAB71250.1| 319|Caenorhabditis elegans Hypothetical
protein C30E1.5 protein.
Length = 319
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -1
Query: 517 LVGMSPRMTRLSLLEQSRSRIRLVSRWRPDCVFRFSELIHARYRI 383
++ P + L+L QSR +RL S W P+ +FR + + R I
Sbjct: 156 IISAFPEIQSLTLHHQSRDLVRLKSVWTPE-MFRMASVKLVRVAI 199
>U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform a protein.
Length = 650
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -2
Query: 393 AIVSVRFRSGNYSGYAFIALFMFLGSRFGCHNWRGHLQM-QIRF*FFKVHAPFPGIRFSS 217
+ + + R + +F+ +F +L ++ R H+ + I ++ + F GIRF S
Sbjct: 124 SFLGIPIRKNQKARQSFLDVFFWLRTKLFPQLQRAHIALFYITGAYYSIARRFTGIRFLS 183
Query: 216 RKLGSDAPS 190
SD P+
Sbjct: 184 ASAHSDIPA 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,101,397
Number of Sequences: 27780
Number of extensions: 394991
Number of successful extensions: 1313
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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