Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0916
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   2.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   2.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   3.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.7  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   8.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.1  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.1  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 286 VSPPVVTTEPRSEKHEKGDKCVARIVAGS 372
           V PP    + R E H +   C+AR  AGS
Sbjct: 61  VFPPFRAEDYRQEVHAQVYSCLARSPAGS 89


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = -3

Query: 509 DESKDDASESLGTES*PDSARLEVAAGLCFPVLGVDSCPLSY 384
           DE+  D    LG        R +   G C P  G D+C   Y
Sbjct: 86  DEANVDEDIMLGLLPDQLQERAQSVMGKCLPTSGSDNCNKIY 127


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = -3

Query: 509 DESKDDASESLGTES*PDSARLEVAAGLCFPVLGVDSCPLSY 384
           DE+  D    LG        R +   G C P  G D+C   Y
Sbjct: 86  DEANVDEDIMLGLLPDQLQERAQSVMGKCLPTSGSDNCNKIY 127


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 191 DGASDPNLREEKRIPGNGACTL 256
           +GAS P  R +   P N  C L
Sbjct: 20  EGASSPKKRNKNPQPKNAVCAL 41


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 439 WRPDCVFR 416
           WRPDC F+
Sbjct: 88  WRPDCFFK 95


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 295 PVVTTEPRSEKHEK 336
           PV+T EPR  K  K
Sbjct: 37  PVITIEPRRRKFHK 50


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 354 GYAFIALFMFLGSRFGC 304
           G  F  ++  LGS FGC
Sbjct: 121 GPLFCQIYAMLGSLFGC 137


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 321 GSRFGCHNWRGHLQMQI 271
           G  F CHN+   L + I
Sbjct: 173 GKEFDCHNYMSELTVDI 189


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 354 GYAFIALFMFLGSRFGC 304
           G  F  ++  LGS FGC
Sbjct: 87  GPLFCQIYAMLGSLFGC 103


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 103 IWFVISPTYSTPWPGHGSFATITN 32
           I+++ +P Y  P+ G     TIT+
Sbjct: 53  IYYIYNPRYPLPYSGSKCTWTITS 76


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 640 RCQAYLHVNDSLATSRMNDRLCC 572
           RC +YL V+ S         +CC
Sbjct: 56  RCSSYLQVSGSKIWQMERSCMCC 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,138
Number of Sequences: 438
Number of extensions: 4718
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)