Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0915
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39472-6|AAK31392.1|  218|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    28   5.3  

>U39472-6|AAK31392.1|  218|Caenorhabditis elegans Hypothetical
           protein B0304.2 protein.
          Length = 218

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 135 STSKKITEKGSVYTHHFTKALFHPI 209
           ST++K TE GS+Y+ H   A F P+
Sbjct: 143 STTRKRTENGSIYSRHRLGATFSPL 167


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
            F25C8.3b protein.
          Length = 3175

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 242  IKVSINQHHNLISLHIIFQMNIKENVRLGLKVLLPGFKKII 364
            + V+   H   +S H I + +I + + LGLKVL+  F K++
Sbjct: 2841 VSVTDRGHSATVSTHRIVRESICQAIYLGLKVLMLTFGKLL 2881


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
            F25C8.3a protein.
          Length = 3184

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 242  IKVSINQHHNLISLHIIFQMNIKENVRLGLKVLLPGFKKII 364
            + V+   H   +S H I + +I + + LGLKVL+  F K++
Sbjct: 2850 VSVTDRGHSATVSTHRIVRESICQAIYLGLKVLMLTFGKLL 2890


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,070
Number of Sequences: 27780
Number of extensions: 218596
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)