Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0915
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi...    29   2.8  
At1g14110.1 68414.m01668 xyloglucan fucosyltransferase family pr...    28   5.0  
At1g69020.1 68414.m07897 prolyl oligopeptidase family protein si...    28   6.6  
At1g40390.1 68414.m04790 hypothetical protein                          27   8.7  

>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
           protein contains similarity to RNA binding protein PufA
           [Dictyostelium discoideum] gi|5106561|gb|AAD39751
          Length = 524

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 239 LIKVSINQHHNLISLHIIFQMNIKENVRLGLKVLLPGF 352
           L+K+SIN +   +   +I  +  KE + L    L+PGF
Sbjct: 321 LVKISINNYGTRVVQKLIETVTTKEQISLVKSALVPGF 358


>At1g14110.1 68414.m01668 xyloglucan fucosyltransferase family
           protein contains Pfam profile: PF03254 xyloglucan
           fucosyltransferase
          Length = 907

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 120 VPSFLSTSKKITEKGSVYTHHFTKALFHP 206
           +PSF S   K+  +     HH  + LFHP
Sbjct: 268 IPSFQSELSKLFPQKETVFHHLARYLFHP 296


>At1g69020.1 68414.m07897 prolyl oligopeptidase family protein
           similar to SP|Q59536 Protease II (EC 3.4.21.83)
           (Oligopeptidase B) {Moraxella lacunata}; contains Pfam
           profiles PF00326: prolyl oligopeptidase family, PF02897:
           Prolyl oligopeptidase, N-terminal beta-propeller domain;
           contains non-consensus GA donor splice site at intron 5
          Length = 757

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 84  HKVWENETKPPDVPSFLSTSKKITEKGSVYTHH 182
           HK      K   +  F+ ++K + EKG V+ HH
Sbjct: 565 HKSGTRSLKQNSIQDFIYSAKYLVEKGYVHRHH 597


>At1g40390.1 68414.m04790 hypothetical protein
          Length = 426

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +3

Query: 90  VWENETKPPDVPSFLSTSKKITEKGSVYTHHFTKALFHPISC 215
           +    + P    SF  +    T + S   HHFT  L H + C
Sbjct: 350 IMSKHSTPRSTRSFKISRDHSTPRSSRRNHHFTSPLDHEVEC 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,626,964
Number of Sequences: 28952
Number of extensions: 194440
Number of successful extensions: 380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)