Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0914
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VVI1 Cluster: CG7564-PA; n=2; Eumetazoa|Rep: CG7564-P...    63   7e-09
UniRef50_UPI0000E469DC Cluster: PREDICTED: similar to CG7564-PA;...    57   4e-07
UniRef50_Q9Y383 Cluster: Putative RNA-binding protein Luc7-like ...    54   2e-06
UniRef50_Q09217 Cluster: Uncharacterized protein B0495.8; n=3; C...    42   0.017
UniRef50_Q9USM4 Cluster: U1 snRNP-associated protein Usp106; n=1...    38   0.28 

>UniRef50_Q9VVI1 Cluster: CG7564-PA; n=2; Eumetazoa|Rep: CG7564-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 420

 Score = 62.9 bits (146), Expect = 7e-09
 Identities = 30/42 (71%), Positives = 34/42 (80%)
 Frame = +1

Query: 289 VKATEHLXAFIADXDRRTTAXKQRLAETHEELSAEVTEKANA 414
           ++A EHL AFIAD DRRT + KQRL ET EEL+AEV EKANA
Sbjct: 89  IEAMEHLQAFIADCDRRTDSAKQRLKETQEELTAEVAEKANA 130



 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 22/29 (75%), Positives = 27/29 (93%)
 Frame = +1

Query: 1   GECPKIHDLALRADYEIASKTKDYFYDID 87
           GECPK+HDLA RADYE A+KT+DY+YDI+
Sbjct: 62  GECPKVHDLAFRADYESAAKTRDYYYDIE 90



 Score = 43.6 bits (98), Expect = 0.004
 Identities = 26/72 (36%), Positives = 36/72 (50%)
 Frame = +3

Query: 402 ESQCCHELXEQIGXKLARAXALGEXGMVXXSAN*WED*RTXXKRKLSPXKDXSXIPFPXS 581
           ++   H L E+IG KLA+A ALGE G V  S    ++      +K+    +      P S
Sbjct: 127 KANAVHGLAEEIGKKLAKAEALGEAGEVEDSMELMKEIEELRAKKIKAEHEY-RTSMPAS 185

Query: 582 SXQQQKXLXCEV 617
           + QQQK   CEV
Sbjct: 186 TYQQQKLRVCEV 197


>UniRef50_UPI0000E469DC Cluster: PREDICTED: similar to CG7564-PA;
           n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
           similar to CG7564-PA - Strongylocentrotus purpuratus
          Length = 472

 Score = 56.8 bits (131), Expect = 4e-07
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
 Frame = +1

Query: 268 NKILLFYVKATEHLXAFIADXDRRTTAXKQRLAETHEELSAEVTEKANAAMNXQSK*GXN 447
           NK   +++ AT+HL +FIAD DRRT   K+RL ET E LSAEV  KA+         G  
Sbjct: 58  NKDFGYHIDATQHLQSFIADCDRRTENSKKRLLETQESLSAEVNHKADCVHEMAEMLGKK 117

Query: 448 WLGL-XHSEKXVWSMXVXINGKIDELXTKE 534
                 H E+      + +  +++E+  K+
Sbjct: 118 IADAEKHGEEGDVEKSMEVMAEVEEIRQKK 147



 Score = 42.7 bits (96), Expect = 0.008
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = +1

Query: 1   GECPKIHDLALRADYEIASKTKDYFYDIDVS 93
           G C K HD ALRADYE A+K KD+ Y ID +
Sbjct: 38  GACSKHHDPALRADYEQAAKNKDFGYHIDAT 68



 Score = 41.1 bits (92), Expect = 0.023
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +3

Query: 402 ESQCCHELXEQIGXKLARAXALGEXGMVXXSAN*WED*RTXXKRKLSPXKDXSXIPFPXS 581
           ++ C HE+ E +G K+A A   GE G V  S     +     ++K++  ++      P S
Sbjct: 103 KADCVHEMAEMLGKKIADAEKHGEEGDVEKSMEVMAEVEEIRQKKIAAEEELRN-SMPAS 161

Query: 582 SXQQQKXLXCEV 617
           + QQQK   CEV
Sbjct: 162 TYQQQKLRVCEV 173


>UniRef50_Q9Y383 Cluster: Putative RNA-binding protein Luc7-like 2;
           n=97; Bilateria|Rep: Putative RNA-binding protein
           Luc7-like 2 - Homo sapiens (Human)
          Length = 392

 Score = 54.4 bits (125), Expect = 2e-06
 Identities = 26/42 (61%), Positives = 31/42 (73%)
 Frame = +1

Query: 283 FYVKATEHLXAFIADXDRRTTAXKQRLAETHEELSAEVTEKA 408
           F + A +HL +FIAD DRRT   K+RLAET EE+SAEV  KA
Sbjct: 82  FELDAMDHLQSFIADCDRRTEVAKKRLAETQEEISAEVAAKA 123



 Score = 53.6 bits (123), Expect = 4e-06
 Identities = 21/29 (72%), Positives = 27/29 (93%)
 Frame = +1

Query: 1   GECPKIHDLALRADYEIASKTKDYFYDID 87
           GEC K+HDLALRADYEIASK +D+F+++D
Sbjct: 57  GECLKVHDLALRADYEIASKEQDFFFELD 85



 Score = 36.7 bits (81), Expect = 0.49
 Identities = 24/67 (35%), Positives = 31/67 (46%)
 Frame = +3

Query: 417 HELXEQIGXKLARAXALGEXGMVXXSAN*WED*RTXXKRKLSPXKDXSXIPFPXSSXQQQ 596
           HEL E+IG  LA+   LG  G V  S    ++      +K    ++      P SS QQQ
Sbjct: 127 HELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKK-REAEEVYRNSMPASSFQQQ 185

Query: 597 KXLXCEV 617
           K   CEV
Sbjct: 186 KLRVCEV 192


>UniRef50_Q09217 Cluster: Uncharacterized protein B0495.8; n=3;
           Caenorhabditis|Rep: Uncharacterized protein B0495.8 -
           Caenorhabditis elegans
          Length = 313

 Score = 41.5 bits (93), Expect = 0.017
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +1

Query: 7   CPKIHDLALRADYEIASKTKDYFYDID 87
           C K+H+ A +ADYE A K KD+FYD+D
Sbjct: 58  CRKVHEPAHKADYERAQKEKDHFYDVD 84


>UniRef50_Q9USM4 Cluster: U1 snRNP-associated protein Usp106; n=1;
           Schizosaccharomyces pombe|Rep: U1 snRNP-associated
           protein Usp106 - Schizosaccharomyces pombe (Fission
           yeast)
          Length = 264

 Score = 37.5 bits (83), Expect = 0.28
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 1   GECPKIHDLALRADYEIASKTKDYFYDID 87
           G CPKIH   L++DYE AS + DY Y+ D
Sbjct: 55  GPCPKIHSDKLKSDYERASYSHDYGYEWD 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,088,163
Number of Sequences: 1657284
Number of extensions: 6500719
Number of successful extensions: 12180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12178
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)