Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0914
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    38   0.002
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    26   4.2  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    26   5.5  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    25   9.7  

>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +1

Query: 1   GECPKIHDLALRADYEIASKTKDYFYDID 87
           G CPKIH   L++DYE AS + DY Y+ D
Sbjct: 55  GPCPKIHSDKLKSDYERASYSHDYGYEWD 83


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 19  HDLA-LRADYEIASKTKDYFYDIDV 90
           HD A ++AD+ I S T  Y+Y+I +
Sbjct: 96  HDAASVKADHAIPSNTSIYYYEIQI 120


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 499 INGKIDELXTKESYRRXRTXRXFHSRFRPXN 591
           INGK+ E+ TKES         + S F   N
Sbjct: 34  INGKVQEIDTKESLENVDRYGNYRSDFNVNN 64


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 40  DYEIASKTKDYFYDI 84
           D+ + SK +DYFYD+
Sbjct: 319 DFLVPSKIQDYFYDV 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,927
Number of Sequences: 5004
Number of extensions: 29448
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)