Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0914
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894...    28   5.7  
06_02_0186 + 12787866-12788055,12788575-12788642,12788864-127890...    28   5.7  
03_06_0641 - 35232858-35232892,35233066-35233290,35233785-352339...    28   7.6  

>07_01_1032 -
           8947594-8947769,8947885-8948601,8948973-8949049,
           8949264-8949655,8949746-8950002,8950234-8950921
          Length = 768

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 236 SLTALIHGRIHVKTXHLRLEVLRYINQNLKL 144
           S  A IH ++  K  H +L  L Y+N NL+L
Sbjct: 507 STFAFIHTKLRNKLTHKKLNKLVYVNYNLQL 537


>06_02_0186 +
           12787866-12788055,12788575-12788642,12788864-12789007,
           12789112-12789268,12789344-12789366,12789487-12789495,
           12789694-12790108,12790449-12790652,12790741-12791201,
           12791206-12791476,12791560-12791951
          Length = 777

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 236 SLTALIHGRIHVKTXHLRLEVLRYINQNLKL 144
           S  A +H ++  +  H +L  L Y+N NL+L
Sbjct: 439 STFAFVHTKVRNRLTHKKLNKLAYVNYNLRL 469


>03_06_0641 -
           35232858-35232892,35233066-35233290,35233785-35233929,
           35234295-35234406,35234477-35234535,35234981-35235022,
           35235372-35235434,35235636-35235697,35236298-35236451,
           35236572-35236651,35237646-35237709,35237791-35237959,
           35238002-35238114,35238361-35238507
          Length = 489

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 1   GECPKIHDLALRADYEIASKT 63
           G CPK+H L LR +Y +   T
Sbjct: 54  GPCPKVHSLQLRKEYPLTYGT 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,938
Number of Sequences: 37544
Number of extensions: 174064
Number of successful extensions: 302
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)